RNA id: TU1296250


Basic Information

Item Value
RNA id TU1296250
length 470
lncRNA type intronic
GC content 0.58
exon number 2
gene id G1137577
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 3658358 ~ 3661831 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cccctacactctaaccactaggctacctgccgcccctacactctaaccactaggctacctgccgcccctacactctaaccactaggctacctgccgcccctacactctaaccactaggctacctgccgcccctacactctaaccactaggctacctgccgcctctacactctaaccaccaggctacctgccgcccctacactctaaccactaggctacctgccgccccaacactctaaccactaggctacctgccgcccctacactataaccactaggctacctgccgcccctacactctaaccactaggctacctgtcgcccctacactctaaccactaggctacctgccgcccctacactctaaacactaggctacctgccgcctctacactctaaccactaggctacctgccgcccctacactctaaccactaggctacctgccgccccaacactctaaccactagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1296228 lncRNA downstream 39448 3617298 ~ 3618910 (-) False G1137557
TU1296227 lncRNA downstream 39448 3618099 ~ 3618910 (-) True G1137557
TU1296211 lncRNA downstream 58235 3598777 ~ 3600123 (-) False G1137543
TU1296212 lncRNA downstream 58235 3598777 ~ 3600123 (-) True G1137543
TU1296209 lncRNA downstream 59977 3597361 ~ 3598381 (-) True G1137542
TU1296258 lncRNA upstream 9073 3670904 ~ 3672509 (-) False G1137583
TU1296263 lncRNA upstream 9449 3671280 ~ 3675424 (-) False G1137583
TU1296264 lncRNA upstream 9449 3671280 ~ 3675424 (-) False G1137583
TU1296265 lncRNA upstream 9449 3671280 ~ 3675424 (-) False G1137583
TU1296267 lncRNA upstream 9449 3671280 ~ 3675424 (-) False G1137583
XM_036942159.1 mRNA downstream 73978 3572962 ~ 3584380 (-) False LOC110524887
XM_036942160.1 mRNA downstream 73978 3572962 ~ 3584380 (-) True LOC110524887
XM_036942163.1 mRNA downstream 75953 3572962 ~ 3582405 (-) False LOC110524887
XM_036942161.1 mRNA downstream 77461 3572962 ~ 3580897 (-) False LOC110524887
XM_036942178.1 mRNA downstream 104297 3533508 ~ 3554061 (-) False LOC110517154
XR_005035407.1 mRNA upstream 36913 3698744 ~ 3700326 (-) False LOC118938144
XR_005035408.1 mRNA upstream 39715 3701546 ~ 3702061 (-) False LOC118938145
XR_005035409.1 mRNA upstream 39715 3701546 ~ 3702061 (-) True LOC118938145
LOC118938513 mRNA upstream 186861 3848692 ~ 3891054 (-) False LOC118938513
XM_036939868.1 mRNA upstream 245060 3906891 ~ 3920630 (-) False LOC110493403
TU1296158 other downstream 126234 3528439 ~ 3532124 (-) True LOC110487308
TU1295655 other downstream 470174 3161279 ~ 3188184 (-) True LOC110514041
TU1295641 other downstream 527805 3129613 ~ 3130553 (-) True G1137174
TU1295328 other downstream 798317 2859031 ~ 2860041 (-) True G1136948
TU1294843 other downstream 1135997 2521827 ~ 2522361 (-) True G1136568
TU1296425 other upstream 69790 3731621 ~ 3733300 (-) True G1137666
TU1296434 other upstream 103451 3765282 ~ 3765816 (-) True G1137672
TU1297095 other upstream 732914 4394745 ~ 4421260 (-) False G1138151
TU1297206 other upstream 957664 4619495 ~ 4619864 (-) False G1138232
TU1297677 other upstream 1496334 5158165 ~ 5162954 (-) True G1138568

Expression Profile