RNA id: TU1296993



Basic Information


Item Value
RNA id TU1296993
length 1749
lncRNA type intronic
GC content 0.55
exon number 2
gene id G1138059
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4060525 ~ 4064639 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tcacctggtgaggtgttctggggtctggagggctgttttcctggctagtcacctggtgaggtgttctggggtctggaggtctgttttcctgactagtcacctggtgaggtgttctggggtctggagggctgttttcctggctagtcacctggtgaggtgttctggggtctggaggtctgttttcctgactagtcacctggtgaggtgttctggggtctggagggctgttttcctctctagtcacctggtgaggtgttctggggtctcgagggctgttttcctctctagtcacctggtgaggtgttctggggtctggagggctgttttcctctctagtcacctggtgaggtgttctggggtctcgagggctgttttcctctctagtcacctggtgaggtgttctggggtctggaggtctgttttccgggctagtcacctggtgaagtgttctggggtctggaggtctgttttcctctgttttcctgactagtcacctggtgaggtgttctggggtctggaggtctgttttaaTCTGTTTTCCTgattagtcacctggtgaggtgttctggggtctggagggctgttctccctctgttttcctggatggtcacctggtgaggtgttctggggtctggagggctgttctccctctgttttcctggatgttcacctggtgaggtgttctggggtctggaggtctgttttccttgatggtcacctggtgaggtgttctggggtctggatgtctgttttcctggctagtcacctggtgaggtgttctggggtctggaggtctgttttcctggatggtcacctggtgaggtgttctggggtctggagggctgttttcctctctagtcacctggtgaggtgttctggggtctcgagggctgttttcctctctagtcacctggtgaggtgttctggggtctggagggctgttttcctctctagtcacctggtgaggtgttctggggtctcgagggctgttttcctctctagtcacctggtgaggtgttctggggtctggaggtctgttttccgggctagtcacctggtgaagtgttctggggtctggaggtctgttttcctctgttttcctgactagtcacctggtgaggtgttctggggtctggaggtctgttttcctctgttttcctggctagtcacctggtgaggtgttctggggtctggaggtctgttttcctggctagtcacctggtgagatGTTCtaaggtctggaggtctgttttcctggctagtcacctggtgaggtggtcTTGAgggctgttctctctctgttttcctggatgttcacctggtgaggtggtctggaggtctgttttcctggatggtcacctggtgaggtgttctggggtctggaggtctgttttcctggctagtcacctggtgaggtgttctggggtctggagggctgttttcctctccagtcacctggtgaggtgttctggggtctcgagggctgttttcctctctagtcacctggtgaggtgttctggggtctggaggtctgttttcctgggtagtcacctggtgagttgttctggggtctggagggctgttctccctctgttttcctgactagtcacctggtgaggtgttctgggtctggaggtctgttttcctctctagtcacctggtgaggtgttctggggtctggaggtctgttttcctggatggtcacctggtgaggtgttctggggtctggagggctgttttcctctctag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1296974 lncRNA downstream 444 4059381 ~ 4060081 (-) True G1138041
TU1296935 lncRNA downstream 5128 4054562 ~ 4055397 (-) True G1138005
TU1296949 lncRNA downstream 6632 4053242 ~ 4053893 (-) True G1138019
TU1296951 lncRNA downstream 39831 4013776 ~ 4020694 (-) True G1138021
TU1296962 lncRNA downstream 81885 3977857 ~ 3978640 (-) True G1138032
TU1296994 lncRNA upstream 5215 4068865 ~ 4069299 (-) True G1138060
TU1296952 lncRNA upstream 10535 4074185 ~ 4074705 (-) True G1138022
TU1296996 lncRNA upstream 17164 4080814 ~ 4081034 (-) True G1138062
TU1296998 lncRNA upstream 18930 4082580 ~ 4082945 (-) True G1138064
TU1296999 lncRNA upstream 20645 4084295 ~ 4084596 (-) True G1138065
XM_021594034.2 mRNA downstream 39999 4019218 ~ 4020526 (-) True LOC110514885
XM_021594035.2 mRNA downstream 40001 4019218 ~ 4020524 (-) False LOC110514885
XM_036939872.1 mRNA downstream 41916 3992371 ~ 4018609 (-) False LOC110512903
XM_036939873.1 mRNA downstream 41916 3992371 ~ 4018609 (-) True LOC110512903
XM_036939870.1 mRNA downstream 139894 3906899 ~ 3920631 (-) True LOC110493403
XM_036939881.1 mRNA upstream 35271 4098921 ~ 4114267 (-) False LOC110485446
XM_036939884.1 mRNA upstream 35271 4098921 ~ 4114271 (-) False LOC110485446
XM_036939879.1 mRNA upstream 35271 4098921 ~ 4114272 (-) False LOC110485446
XM_036939880.1 mRNA upstream 35271 4098921 ~ 4114272 (-) False LOC110485446
XM_036939882.1 mRNA upstream 35271 4098921 ~ 4114272 (-) False LOC110485446
TU1296434 other downstream 294709 3765282 ~ 3765816 (-) True G1137672
TU1296425 other downstream 327225 3731621 ~ 3733300 (-) True G1137666
TU1296158 other downstream 528401 3528439 ~ 3532124 (-) True LOC110487308
TU1295655 other downstream 872341 3161279 ~ 3188184 (-) True LOC110514041
TU1295641 other downstream 929972 3129613 ~ 3130553 (-) True G1137174
TU1297095 other upstream 331095 4394745 ~ 4421260 (-) False G1138151
TU1297206 other upstream 555845 4619495 ~ 4619864 (-) False G1138232
TU1297677 other upstream 1094515 5158165 ~ 5162954 (-) True G1138568
TU1297653 other upstream 1137405 5201055 ~ 5262513 (-) False G1138553
TU1297654 other upstream 1137405 5201055 ~ 5257523 (-) True G1138553

Expression Profile