RNA id: TU1297414


Basic Information

Item Value
RNA id TU1297414
length 446
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1138362
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 4864307 ~ 4865332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgataaatattccacacaaagagattcattaccgagagagcgagagagagagaagagaagacaaccgagagagagaagagaagacagcagagagagagagaacagaagacaacagagaaagagagggagagagagagagaagacaacagagagagagagagaatacaacagagagagagagagagagagagagagagagagagaagacaacagagagagaaagagagggagagagagagagagaagacaacagacagagaaagagaagagaaaccaagagagagagaagagaagagaatacaacagagagagagagagagaagacaacagacagagaaagagcagagaaaccaagagagagagaagagaagagaatacaacagagagagatgcatgcataattctgcaaaaatatcctctgcgtacaacgtagaacaccaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1297388 lncRNA downstream 39061 4824529 ~ 4825246 (-) True G1138340
TU1297376 lncRNA downstream 58353 4805507 ~ 4805954 (-) True G1138331
TU1297347 lncRNA downstream 93672 4767922 ~ 4770635 (-) False G1138316
TU1297416 lncRNA upstream 1660 4866992 ~ 4868323 (-) True G1138364
TU1297634 lncRNA upstream 74353 4939685 ~ 4940698 (-) True G1138542
TU1297688 lncRNA upstream 118465 4983797 ~ 5013387 (-) True G1138579
TU1297700 lncRNA upstream 144636 5009968 ~ 5010813 (-) True G1138591
TU1297703 lncRNA upstream 151489 5016821 ~ 5017043 (-) True G1138593
XM_036939922.1 mRNA downstream 26299 4814745 ~ 4838008 (-) True LOC110510582
XM_036939921.1 mRNA downstream 56684 4797759 ~ 4807623 (-) True LOC110493400
XM_036939919.1 mRNA downstream 67753 4770679 ~ 4796554 (-) True LOC118936519
XR_005035413.1 mRNA downstream 97047 4756147 ~ 4767260 (-) False LOC118938155
XM_036939918.1 mRNA downstream 97047 4756281 ~ 4767260 (-) True LOC118938155
XM_036939923.1 mRNA upstream 77797 4943129 ~ 5000791 (-) True gcgrb
XM_036939924.1 mRNA upstream 162746 5028078 ~ 5055105 (-) True LOC110513279
XM_036939925.1 mRNA upstream 193119 5058451 ~ 5061519 (-) True LOC110513280
XR_005035416.1 mRNA upstream 227283 5092615 ~ 5094351 (-) False LOC110485437
XM_036939929.1 mRNA upstream 247499 5112831 ~ 5115196 (-) True LOC118938158
TU1297206 other downstream 244443 4619495 ~ 4619864 (-) False G1138232
TU1297095 other downstream 443047 4394745 ~ 4421260 (-) False G1138151
TU1296434 other downstream 1098491 3765282 ~ 3765816 (-) True G1137672
TU1296425 other downstream 1131007 3731621 ~ 3733300 (-) True G1137666
TU1296158 other downstream 1332183 3528439 ~ 3532124 (-) True LOC110487308
TU1297677 other upstream 292833 5158165 ~ 5162954 (-) True G1138568
TU1297653 other upstream 335723 5201055 ~ 5262513 (-) False G1138553
TU1297654 other upstream 335723 5201055 ~ 5257523 (-) True G1138553
TU1297671 other upstream 352359 5217691 ~ 5244404 (-) True LOC118936520
TU1299312 other upstream 806128 5671460 ~ 5672247 (-) True LOC118938515

Expression Profile