RNA id: TU1297653


Basic Information

Item Value
RNA id TU1297653
length 920
RNA type TUCP
GC content 0.46
exon number 5
gene id G1138553
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5201055 ~ 5262513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCTGTTCTGGTAAAACAGCAGTAGAGGGTGTAGTCACTAGTTTGAAGCCAACAGAAGAGTTGGATCTGAGATCAATCTTTGTCTTCTCCTCCAACTAACCAGAGTTTCATTGAGGACTGGAGCTGATGAACTACAGAACACAGCTTTTCTAAGAACATCcaggaagaagagaagaaagaCGAGTTTCATTGAGGACTGGAGCTGATGAACTACAGAACACAGCTTTTCTAAGAACATCcaggaagaagagaagaaagaCGATATGGGACGAAGAAGAGGAGGGACTCTGAAGATTCTGTTACTGTTGACACTCTGTCTGCATGCCTTCACTGGTCAATGCCAagATTCAGGGCAGCCCTCTGACCTGAGGATAGTTCTGATAGGGAAGACTGGATCAGGGAAGAGTTCAACAGGAAACACCATCCTGGGGAGAAAGGTGTTTAGAGAAGACCTCTCCCCTGAGTCTGTCACTGTTCACTGTGAGAAACAGAGTGGAGTGGTGGATGGGAGGAAGATTGATGTCATCGACACCCCGGGGCTCTATGACACAACAATGTCTAAAGAAGAGATGAAAAGTGAGATAGAAAAGGCCATCTACATGTCAGTCCCAGGACCTCACGCCTTCCTGCTGGTGATCAGACTGGGGAGgttcacagaggaggagaggaacactgTGAAGTGGATCCAGGAGAACTTTGGAGAAGAAGCATCAATGTACACCATCATTCTGTTCACCGGAGGAGACCAGCTGGAGGACAAATCAATGGTGGACTTTCTAAGTGAGAGTGAGGAGCTTATGAAACTCGTCAAGGTCTTTAAGGGCAGAAATCATGTCTTCGATAATAAAAAGAAGAATGACAACACTCAGGTCCCAGAGCTGCTGAAGAAGATAGAGGAGATGGTGAAGAAGAATGGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1297681 lncRNA downstream 10684 5172449 ~ 5190371 (-) True G1138572
TU1297673 lncRNA downstream 26556 5084925 ~ 5174499 (-) True G1138564
TU1297739 lncRNA downstream 54419 5146263 ~ 5146636 (-) True G1138620
TU1297738 lncRNA downstream 54905 5144597 ~ 5146150 (-) True G1138619
TU1297683 lncRNA downstream 67197 5133317 ~ 5133858 (-) True G1138574
TU1297754 lncRNA upstream 10871 5273384 ~ 5273692 (-) True G1138634
TU1297757 lncRNA upstream 14536 5277049 ~ 5277273 (-) True G1138637
TU1297760 lncRNA upstream 24860 5287373 ~ 5287611 (-) True G1138640
TU1297765 lncRNA upstream 37338 5299851 ~ 5301300 (-) False G1138645
TU1297766 lncRNA upstream 37338 5299851 ~ 5301300 (-) True G1138645
XM_036939933.1 mRNA downstream 23138 5168329 ~ 5177917 (-) True LOC118938161
XM_036939930.1 mRNA downstream 45955 5149240 ~ 5155100 (-) True LOC118938159
XM_021556506.2 mRNA downstream 59432 5138584 ~ 5141623 (-) True LOC110485440
XM_036939932.1 mRNA downstream 59476 5128224 ~ 5141579 (-) False LOC110485443
XM_036939931.1 mRNA downstream 69591 5128229 ~ 5131464 (-) True LOC110485443
XM_021556513.2 mRNA upstream 16433 5278946 ~ 5280863 (-) True LOC110485445
XM_036939955.1 mRNA upstream 322541 5585054 ~ 5595560 (-) False LOC110517601
XM_036939954.1 mRNA upstream 322636 5585149 ~ 5595559 (-) True LOC110517601
XM_036942604.1 mRNA upstream 364098 5626611 ~ 5629846 (-) True LOC110516670
XM_036942560.1 mRNA upstream 408924 5671437 ~ 5678473 (-) False LOC118938515
TU1297677 other downstream 38101 5158165 ~ 5162954 (-) True G1138568
TU1297206 other downstream 581191 4619495 ~ 4619864 (-) False G1138232
TU1297095 other downstream 779795 4394745 ~ 4421260 (-) False G1138151
TU1296434 other downstream 1435239 3765282 ~ 3765816 (-) True G1137672
TU1296425 other downstream 1467755 3731621 ~ 3733300 (-) True G1137666
TU1299312 other upstream 408947 5671460 ~ 5672247 (-) True LOC118938515
TU1299433 other upstream 782344 6044857 ~ 6048940 (-) False LOC110512654
TU1299538 other upstream 829846 6092359 ~ 6093516 (-) True G1139916
TU1299683 other upstream 1343806 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 1361639 6624152 ~ 6628820 (-) False LOC110485426

Expression Profile