RNA id: TU1297829



Basic Information


Item Value
RNA id TU1297829
length 1057
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G1138688
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5431673 ~ 5457057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGAAGATAGTTTATTCCctagaacagagagacagagtgctaTTGTACTTTAACACAGtcgcacacacaccttcacacacacaccttcacagaCACACCTTCACACAAGCTAGTGCAGAACCACACACGctagcgcacacacacattcacaggatAGTACATACACGTTCACACACTCACtagcgcgcacacacaaacacgctaaGACACACAAGAGCATgctaagacacacacaaacacgctaaGACACACACGCTGTGCAGGAACCCACTATACACTTCTGTCAGAAGACAACCTCTAAACTGTAAACATAAAGCTTTTCACGAAACAAACTTTCATTACAACAATGATCATATTTACATCTATTTCCAACacacgcgcacaaacacacagacacacacacactatacacacacacacacacaccagcgtcTTAAGACATTCTATGACAACAGATGGCTTTAGAACTGTTCAGACACAGGCCAACTATCCTTGCTGCTAGGCAACTGTAAGAGCTTCAGCCAATCGGTTAGCAGGGCTTGGGACCACGTCCAACCACCTCTCAGTCATATCAAAGATTCCGCCCCTTTACGACTTCACTCCTCTGATTGGATCAGGGCCCTGTCAGTCCAGCCAGCgacccagccctctctctctgtgtccctgatTCGCTGAGtttgtttcccaatcctgttcCCTGATTGGTTGTCTCCTGGGCGGAAGGGGCGTGCCTCAGTCTGTGTCCATGTCCATGTGACAGGGGTTACTTCCTGTCTCCAGGGCGGTCCTGTAGAGCTTCAGAAAGTGGCGGTAGTGCGGGGAGCAGCCAAGCCACGCCTCTCCGAACCTCACTGCCCCCGTGAACAGGAACTCCCCCTTCTCCCTCGGCTGCAGCCGGCACCGCAGGGGCGTGTTCAGACGTCCGGACCACCCCTTTCCTCTGGCTCCGTCCAGAGAGAACACTCCGCTCTTCTGATGGAACAGGCGGCTTAGCGTCACGGCAACGGAGGAGTGGTCTGATGACGAGGGCATGTCAACGCCACGGATACTGCCACGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1297842 lncRNA downstream 14802 5440260 ~ 5441148 (-) False G1138693
TU1297841 lncRNA downstream 14802 5440630 ~ 5441148 (-) True G1138693
TU1297843 lncRNA downstream 24564 5430690 ~ 5431386 (-) True G1138694
TU1297847 lncRNA downstream 27885 5427522 ~ 5428065 (-) True G1138698
TU1297840 lncRNA downstream 28609 5426990 ~ 5427341 (-) True G1138692
TU1297878 lncRNA upstream 205 5457262 ~ 5457722 (-) False G1138716
TU1297879 lncRNA upstream 205 5457262 ~ 5457722 (-) False G1138716
TU1297880 lncRNA upstream 205 5457262 ~ 5457722 (-) False G1138716
TU1297881 lncRNA upstream 205 5457262 ~ 5457722 (-) True G1138716
TU1297888 lncRNA upstream 1643 5458700 ~ 5459586 (-) True G1138720
XM_021556513.2 mRNA downstream 175087 5278946 ~ 5280863 (-) True LOC110485445
XM_036939937.1 mRNA downstream 189463 5245446 ~ 5266487 (-) True LOC110516762
XM_036939938.1 mRNA downstream 211509 5216411 ~ 5244441 (-) False LOC118936520
XM_036939939.1 mRNA downstream 211514 5216411 ~ 5244436 (-) False LOC118936520
XM_036939934.1 mRNA downstream 244441 5200479 ~ 5211509 (-) True LOC118938162
XM_036939955.1 mRNA upstream 127997 5585054 ~ 5595560 (-) False LOC110517601
XM_036939954.1 mRNA upstream 128092 5585149 ~ 5595559 (-) True LOC110517601
XM_036942604.1 mRNA upstream 169554 5626611 ~ 5629846 (-) True LOC110516670
XM_036942560.1 mRNA upstream 214380 5671437 ~ 5678473 (-) False LOC118938515
XM_036939965.1 mRNA upstream 222107 5679164 ~ 5755819 (-) False LOC110487505
TU1297653 other downstream 193437 5201055 ~ 5262513 (-) False G1138553
TU1297654 other downstream 198427 5201055 ~ 5257523 (-) True G1138553
TU1297671 other downstream 211546 5217691 ~ 5244404 (-) True LOC118936520
TU1297677 other downstream 292996 5158165 ~ 5162954 (-) True G1138568
TU1297206 other downstream 836086 4619495 ~ 4619864 (-) False G1138232
TU1299312 other upstream 214403 5671460 ~ 5672247 (-) True LOC118938515
TU1299433 other upstream 587800 6044857 ~ 6048940 (-) False LOC110512654
TU1299538 other upstream 635302 6092359 ~ 6093516 (-) True G1139916
TU1299683 other upstream 1149262 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 1167095 6624152 ~ 6628820 (-) False LOC110485426

Expression Profile