RNA id: TU1297841


Basic Information

Item Value
RNA id TU1297841
length 490
lncRNA type antisense_over
GC content 0.59
exon number 2
gene id G1138693
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5440260 ~ 5441148 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCTCAGACATCAGCAGGCGGAGCTGTCCAGCTCTCTCCAGGTAGAGGTGTGATCCGCGGGAGTCTGTCTGGGGCTTGATGCAGGCGTGCAGGCCGGAGGAAGCCCCAGACGTGGGCTCCGTGTTGGGCCGCAGGTTGACGATGAGGGCCCCAGTAGGATAGAGCCACTCTAGACTGCCCTGGGAGCAACGCAGGTATACCTGCTCCACATCACGGGAGTGAGACTCATGGGTCAGACcactgggggaggagagagggagagagagagggagagagggggacagtagGGTAGAGAAGAAGTTAAGGTATTgcggaaggaggagagagggtaaaggggaggaggaggagagagggtaaaggggaggagaaggaggagaggttatgatgatgggggaggaggaggagaggttatgatgatgggggaggaggaggagaggttatgatgatgggggaggaggaggagaggttatgatgatgggggaggagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1297843 lncRNA downstream 9244 5430690 ~ 5431386 (-) True G1138694
TU1297847 lncRNA downstream 12565 5427522 ~ 5428065 (-) True G1138698
TU1297840 lncRNA downstream 13289 5426990 ~ 5427341 (-) True G1138692
TU1297845 lncRNA downstream 17101 5421928 ~ 5423529 (-) True G1138696
TU1297868 lncRNA downstream 51798 5388566 ~ 5388832 (-) True G1138706
TU1297828 lncRNA upstream 14802 5455950 ~ 5457057 (-) False G1138688
TU1297829 lncRNA upstream 14802 5455950 ~ 5457057 (-) False G1138688
TU1297831 lncRNA upstream 14802 5455950 ~ 5457057 (-) True G1138688
TU1297878 lncRNA upstream 16114 5457262 ~ 5457722 (-) False G1138716
TU1297879 lncRNA upstream 16114 5457262 ~ 5457722 (-) False G1138716
XM_021556513.2 mRNA downstream 159767 5278946 ~ 5280863 (-) True LOC110485445
XM_036939937.1 mRNA downstream 174143 5245446 ~ 5266487 (-) True LOC110516762
XM_036939938.1 mRNA downstream 196189 5216411 ~ 5244441 (-) False LOC118936520
XM_036939939.1 mRNA downstream 196194 5216411 ~ 5244436 (-) False LOC118936520
XM_036939934.1 mRNA downstream 229121 5200479 ~ 5211509 (-) True LOC118938162
XM_036939955.1 mRNA upstream 143906 5585054 ~ 5595560 (-) False LOC110517601
XM_036939954.1 mRNA upstream 144001 5585149 ~ 5595559 (-) True LOC110517601
XM_036942604.1 mRNA upstream 185463 5626611 ~ 5629846 (-) True LOC110516670
XM_036942560.1 mRNA upstream 230289 5671437 ~ 5678473 (-) False LOC118938515
XM_036939965.1 mRNA upstream 238016 5679164 ~ 5755819 (-) False LOC110487505
TU1297653 other downstream 178117 5201055 ~ 5262513 (-) False G1138553
TU1297654 other downstream 183107 5201055 ~ 5257523 (-) True G1138553
TU1297671 other downstream 196226 5217691 ~ 5244404 (-) True LOC118936520
TU1297677 other downstream 277676 5158165 ~ 5162954 (-) True G1138568
TU1297206 other downstream 820766 4619495 ~ 4619864 (-) False G1138232
TU1299312 other upstream 230312 5671460 ~ 5672247 (-) True LOC118938515
TU1299433 other upstream 603709 6044857 ~ 6048940 (-) False LOC110512654
TU1299538 other upstream 651211 6092359 ~ 6093516 (-) True G1139916
TU1299683 other upstream 1165171 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 1183004 6624152 ~ 6628820 (-) False LOC110485426

Expression Profile