RNA id: TU1299423


Basic Information

Item Value
RNA id TU1299423
length 1633
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G1139840
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 5823040 ~ 5824694 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTTAAGTCACTGTTCCCCactcggccgtcattgtaaataataatttgttcctaactgacttgcctagttaaaacatgttttttaatcACTCAAACAGTGTCATTCTTTATTTGTTCTTTATTCAAAACACATTACACTGGGAGAACAGATGCTTCATTACCTTTACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAAGATTACGTCCACTATGATACACTATGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATGATACACTGTGTATTACAACATTACCTCTACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATTACAACATTACCTCTACTATAATACACGGTGTGTTACAACATTACCTCCACTATAATACACTGTGTATTTCAACATTATCTCCACTATAATACACTGTGTATTACAACATTACCTCCACTATAATACACTGTGTATCACAACATTACCTCCACTATAATACACTGTATATTACAACATTACCTCCACTACAATACACTGTGTATTACAGCATTACCTCTATTATAATACAATGTGTATTACATTACCTCCACTATGATACACTGTGTATTACAACATTACACAGAAATGCTTGTAAGAGATCTCAAATATAGTGTGTTAGGTGATCTAGTCAATGACAGCATCTATGAGATCTAGATACGAGATCTAGTCTGTGGAGGTAGGAGATCTAGTCTGTGGAGGTAGGGGATCTAGTCAACGGAGGTAGGGGATCTAGTCTGTGGAGGTAGGAGATCTAGTCAACGGAGGTAGGGGATCTAGTCTGTGGAGGTAGGAGATCTAGTCTGTGTTGGGTGATCTGGGCTGACCTGCGGGGCAACTTGATCTCTGTGTTGTTGCTTGTGGATCTCTCAGTGGATCACTCAGTGGATCTCTCAGTGGATCTCTCAGTGGATCACTCAGTGGATCCTGTCCTCCTGACCTGGACTAGCGGCCTATCCTTCGTGATGTGGTAGCTTCCATTGGATCTGGTGTTTTTGATCTGCTTCTGAACAGTGGATCCAGTCTGTGGGATATTTCCGTTTCCGGTGGATTTAGTCTTTGGGATCCGGCCCATCCTTTGAGCGGATCCGGTGTTTGACGTTTTGTCAGGGGATCTTGTCTCTTGGTTCTGGTCAGTGGTTGAGATCTTGGGAGATCCGGTCATTGGGATCTGGGCTCCGACAGGGGATCCGGTTTCTGTCAGCTTGCTGTCGTCAGTGGATCTAGTCTCGGTATCCTCTCCCTCATTGGATGATCCGTCGTGTGGGATCTGGTCTCCATCGTCATCCCCAGGGATAGGGTCTAGCTCTacctccacacacactctctggggTAACACCACTAGCCAGCACTTAGAACAGCTGCTCTCGAAGTACGGATACAGCGTCTCTGTGAAGCGGTGCGTGAAGGTGAACAGGAGTTTGTCCCTCATCGCATCCCAGAATTCCACCTGACCCTCCTCCCAGTCCAGAAACACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299410 lncRNA downstream 20174 5802655 ~ 5802866 (-) True G1139829
TU1299403 lncRNA downstream 55063 5767237 ~ 5767977 (-) True G1139823
TU1299305 lncRNA downstream 66700 5755818 ~ 5756340 (-) True LOC110487505
TU1299398 lncRNA downstream 75873 5745674 ~ 5747167 (-) True G1139818
TU1299314 lncRNA downstream 151754 5669870 ~ 5671286 (-) True G1139746
TU1299444 lncRNA upstream 58571 5883265 ~ 5961963 (-) False G1139846
TU1299443 lncRNA upstream 136693 5961387 ~ 6013720 (-) True G1139846
TU1299494 lncRNA upstream 144019 5968713 ~ 6017737 (-) True G1139887
TU1299495 lncRNA upstream 145123 5969817 ~ 6019166 (-) True G1139888
TU1299498 lncRNA upstream 170547 5995241 ~ 5996066 (-) False G1139890
XM_036939994.1 mRNA downstream 23766 5794309 ~ 5799274 (-) True nxnl1
XM_036939960.1 mRNA downstream 39651 5756733 ~ 5783389 (-) False LOC110485432
XM_036939961.1 mRNA downstream 39651 5756733 ~ 5783389 (-) False LOC110485432
XM_036939962.1 mRNA downstream 39651 5756733 ~ 5783389 (-) True LOC110485432
XM_036939964.1 mRNA downstream 39652 5756733 ~ 5783388 (-) False LOC110485432
XM_036939969.1 mRNA upstream 3706 5828400 ~ 5999277 (-) False LOC110519495
XM_036939970.1 mRNA upstream 3706 5828400 ~ 5999277 (-) False LOC110519495
XM_036939973.1 mRNA upstream 3706 5828400 ~ 5999277 (-) False LOC110519495
XM_036939974.1 mRNA upstream 3706 5828400 ~ 5999277 (-) False LOC110519495
XM_036939975.1 mRNA upstream 3706 5828400 ~ 5999277 (-) False LOC110519495
TU1299312 other downstream 150793 5671460 ~ 5672247 (-) True LOC118938515
TU1297653 other downstream 560527 5201055 ~ 5262513 (-) False G1138553
TU1297654 other downstream 565517 5201055 ~ 5257523 (-) True G1138553
TU1297671 other downstream 578636 5217691 ~ 5244404 (-) True LOC118936520
TU1297677 other downstream 660086 5158165 ~ 5162954 (-) True G1138568
TU1299433 other upstream 220163 6044857 ~ 6048940 (-) False LOC110512654
TU1299538 other upstream 267665 6092359 ~ 6093516 (-) True G1139916
TU1299683 other upstream 781625 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 799458 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 804307 6629001 ~ 6649127 (-) True LOC110485426

Expression Profile