RNA id: TU1299757


Basic Information

Item Value
RNA id TU1299757
length 242
lncRNA type sense_over
GC content 0.43
exon number 3
gene id G1140100
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6591513 ~ 6592780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agttatagagaggtgctaggagttatagagaggtgctagtagttatagagaggtgctagtagttatagagaggtgctagtagttatagagaggtgctaggagttatagagaggtgctaggagaggtgctaggagttatagagagGTGCTAgtagttatagagaggtgctagtagttatagagaggtgctaggagttatagagaggtgctaggagttatagagaggtgctaggagttatagag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299755 lncRNA downstream 411 6590790 ~ 6591102 (-) True G1140099
TU1299753 lncRNA downstream 18056 6571139 ~ 6573457 (-) True G1140097
TU1299752 lncRNA downstream 20685 6568925 ~ 6570828 (-) True G1140096
TU1299743 lncRNA downstream 67476 6523617 ~ 6524037 (-) True G1140087
TU1299724 lncRNA downstream 102198 6488888 ~ 6489315 (-) True G1140068
TU1299764 lncRNA upstream 1900 6594680 ~ 6595051 (-) True G1140101
TU1299765 lncRNA upstream 6022 6598802 ~ 6599032 (-) True G1140102
TU1299682 lncRNA upstream 7362 6600142 ~ 6602034 (-) False LOC110485426
TU1299689 lncRNA upstream 9433 6602213 ~ 6602564 (-) False LOC110485426
TU1299774 lncRNA upstream 105602 6698382 ~ 6700213 (-) True LOC118938170
XM_036940017.1 mRNA downstream 6820 6552817 ~ 6584693 (-) False LOC110485423
XM_036940018.1 mRNA downstream 6820 6552817 ~ 6584693 (-) False LOC110485423
XM_036940019.1 mRNA downstream 6820 6552817 ~ 6584693 (-) True LOC110485423
XM_036940022.1 mRNA downstream 6822 6552817 ~ 6584691 (-) False LOC110485423
XM_036940021.1 mRNA downstream 24586 6552817 ~ 6566927 (-) False LOC110485423
XM_036940039.1 mRNA upstream 7361 6600141 ~ 6631856 (-) False LOC110485426
XM_036940025.1 mRNA upstream 7361 6600141 ~ 6648047 (-) False LOC110485426
XM_036940030.1 mRNA upstream 7361 6600141 ~ 6648047 (-) False LOC110485426
XM_036940031.1 mRNA upstream 7361 6600141 ~ 6648047 (-) False LOC110485426
XM_036940027.1 mRNA upstream 7361 6600141 ~ 6649055 (-) False LOC110485426
TU1299538 other downstream 497997 6092359 ~ 6093516 (-) True G1139916
TU1299433 other downstream 542573 6044857 ~ 6048940 (-) False LOC110512654
TU1299312 other downstream 919266 5671460 ~ 5672247 (-) True LOC118938515
TU1297654 other downstream 1333990 5201055 ~ 5257523 (-) True G1138553
TU1299683 other upstream 13539 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 31372 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 36221 6629001 ~ 6649127 (-) True LOC110485426
TU1299773 other upstream 105602 6698382 ~ 6708978 (-) False LOC118938170
TU1299636 other upstream 186468 6779248 ~ 6782137 (-) True LOC110510388

Expression Profile