RNA id: TU1299765


Basic Information

Item Value
RNA id TU1299765
length 231
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G1140102
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6598802 ~ 6599032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGTGGTGCTGTCTGCCCAActcattaccgggggcaaactacctgccctccaggacacctactgcacccgatgtcacagaaaggccaaaaagataatcaccccgctatcatccagaaggtgaggtcagtacaggtgtatcaaagctgggaccaagagactgaaaaacagcttttatctcaaagccgtcagactgttaaatagccgtcactaacacagagaggctgctgcac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299764 lncRNA downstream 3751 6594680 ~ 6595051 (-) True G1140101
TU1299757 lncRNA downstream 6022 6591513 ~ 6592780 (-) True G1140100
TU1299755 lncRNA downstream 7700 6590790 ~ 6591102 (-) True G1140099
TU1299753 lncRNA downstream 25345 6571139 ~ 6573457 (-) True G1140097
TU1299752 lncRNA downstream 27974 6568925 ~ 6570828 (-) True G1140096
TU1299682 lncRNA upstream 1110 6600142 ~ 6602034 (-) False LOC110485426
TU1299689 lncRNA upstream 3181 6602213 ~ 6602564 (-) False LOC110485426
TU1299774 lncRNA upstream 99350 6698382 ~ 6700213 (-) True LOC118938170
TU1299802 lncRNA upstream 137884 6736916 ~ 6737218 (-) True G1140134
TU1299641 lncRNA upstream 179344 6778376 ~ 6778862 (-) False G1139998
XR_005035756.1 mRNA downstream 5655 6591946 ~ 6593147 (-) True LOC118938537
XM_036940017.1 mRNA downstream 14109 6552817 ~ 6584693 (-) False LOC110485423
XM_036940018.1 mRNA downstream 14109 6552817 ~ 6584693 (-) False LOC110485423
XM_036940019.1 mRNA downstream 14109 6552817 ~ 6584693 (-) True LOC110485423
XM_036940022.1 mRNA downstream 14111 6552817 ~ 6584691 (-) False LOC110485423
XM_036940039.1 mRNA upstream 1109 6600141 ~ 6631856 (-) False LOC110485426
XM_036940025.1 mRNA upstream 1109 6600141 ~ 6648047 (-) False LOC110485426
XM_036940030.1 mRNA upstream 1109 6600141 ~ 6648047 (-) False LOC110485426
XM_036940031.1 mRNA upstream 1109 6600141 ~ 6648047 (-) False LOC110485426
XM_036940027.1 mRNA upstream 1109 6600141 ~ 6649055 (-) False LOC110485426
TU1299538 other downstream 505286 6092359 ~ 6093516 (-) True G1139916
TU1299433 other downstream 549862 6044857 ~ 6048940 (-) False LOC110512654
TU1299312 other downstream 926555 5671460 ~ 5672247 (-) True LOC118938515
TU1297654 other downstream 1341279 5201055 ~ 5257523 (-) True G1138553
TU1299683 other upstream 7287 6606319 ~ 6616996 (-) False LOC110485426
TU1299693 other upstream 25120 6624152 ~ 6628820 (-) False LOC110485426
TU1299690 other upstream 29969 6629001 ~ 6649127 (-) True LOC110485426
TU1299773 other upstream 99350 6698382 ~ 6708978 (-) False LOC118938170
TU1299636 other upstream 180216 6779248 ~ 6782137 (-) True LOC110510388

Expression Profile