RNA id: TU1299640


Basic Information

Item Value
RNA id TU1299640
length 506
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1139998
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 6778376 ~ 6778963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agtcttcccagcctggtgcaggtctacaattttgtttctggtgtcctgtgacagctctttggtcttggccatagtggagtttggagtgtgactgtttgaggttgtggacaggtgtcttttatactgataacaagttcaaacaggtgccattaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatctttctactgccaagtttacaccgtCACTATTGCACTGAAATGTTTTGATCGGGAAGTTGTCTAAATGGGTTATCATTTTTTGTTAgcgagtgaaggaaaagcagccaacaagtgctcagtatatgtgggaactccttcaagacggttggaaaagcattcctcatgaagctggttgagggaatgccaagagtgtgcaaagctgtcatcaaggcaaagggttgctactttgaagaatctcaaatataaaatgtattttatgtttaacacttttttggttactaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1299802 lncRNA downstream 41240 6736916 ~ 6737218 (-) True G1140134
TU1299774 lncRNA downstream 78245 6698382 ~ 6700213 (-) True LOC118938170
TU1299689 lncRNA downstream 175894 6602213 ~ 6602564 (-) False LOC110485426
TU1299682 lncRNA downstream 176424 6600142 ~ 6602034 (-) False LOC110485426
TU1299765 lncRNA downstream 179426 6598802 ~ 6599032 (-) True G1140102
TU1299818 lncRNA upstream 6274 6785237 ~ 6785670 (-) True G1140150
TU1299820 lncRNA upstream 22661 6801624 ~ 6802096 (-) True G1140151
TU1299823 lncRNA upstream 27756 6806719 ~ 6814763 (-) False G1140154
TU1299824 lncRNA upstream 27756 6806719 ~ 6812579 (-) True G1140154
TU1299831 lncRNA upstream 56545 6835508 ~ 6835793 (-) True G1140161
XM_036940050.1 mRNA downstream 61356 6701003 ~ 6717102 (-) False LOC118938170
XM_036940049.1 mRNA downstream 61357 6698319 ~ 6717101 (-) False LOC118938170
XM_036940048.1 mRNA downstream 99888 6655544 ~ 6678570 (-) True LOC110511140
XM_036940045.1 mRNA downstream 99889 6655544 ~ 6678569 (-) False LOC110511140
XM_036940054.1 mRNA upstream 1043 6780006 ~ 6831814 (-) False LOC110510388
XM_036940055.1 mRNA upstream 1043 6780006 ~ 6831814 (-) False LOC110510388
XM_036940058.1 mRNA upstream 63508 6842471 ~ 6851608 (-) False LOC110494877
XM_021570206.2 mRNA upstream 63508 6842471 ~ 6852738 (-) False LOC110494877
XM_036940056.1 mRNA upstream 63508 6842471 ~ 6852738 (-) False LOC110494877
TU1299773 other downstream 69480 6698382 ~ 6708978 (-) False LOC118938170
TU1299690 other downstream 129331 6629001 ~ 6649127 (-) True LOC110485426
TU1299693 other downstream 149638 6624152 ~ 6628820 (-) False LOC110485426
TU1299683 other downstream 161462 6606319 ~ 6616996 (-) False LOC110485426
TU1299538 other downstream 684942 6092359 ~ 6093516 (-) True G1139916
TU1299636 other upstream 285 6779248 ~ 6782137 (-) True LOC110510388
TU1299840 other upstream 66447 6845410 ~ 6852671 (-) True LOC110494877
TU1299886 other upstream 140766 6919729 ~ 6952206 (-) True G1140208
TU1299907 other upstream 148739 6927702 ~ 7076651 (-) False LOC110513509
TU1299928 other upstream 155069 6934032 ~ 7080027 (-) False LOC110513509

Expression Profile