RNA id: TU1300085


Basic Information

Item Value
RNA id TU1300085
length 1471
RNA type TUCP
GC content 0.40
exon number 2
gene id G1140323
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7190696 ~ 7192243 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgcaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgatataatctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgatataatctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctgtgtaatgacagaatctctctctgtgtaatgacagaatctctctctctctctgtgtaatgacagaatctctctctgtgtgtaatgacagaatctctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctcaataatgacatcatctctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctcgctctgtgtaatgatataatctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatttctctctctgtgtaatgacagaatctctttctctctgtgtaatgatataatctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctctctctctgtgtaatgacagaatctctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1300054 lncRNA downstream 36423 7147582 ~ 7154273 (-) True G1140300
TU1300051 lncRNA downstream 43973 7146377 ~ 7146723 (-) True G1140298
TU1300050 lncRNA downstream 44782 7145714 ~ 7145914 (-) True G1140297
TU1300047 lncRNA downstream 52593 7137314 ~ 7138103 (-) True G1140294
TU1300017 lncRNA downstream 56902 7131544 ~ 7133794 (-) False G1140272
TU1300066 lncRNA upstream 16729 7208972 ~ 7210810 (-) False G1140311
TU1300067 lncRNA upstream 16729 7208972 ~ 7210810 (-) False G1140311
TU1300068 lncRNA upstream 16729 7208972 ~ 7210810 (-) False G1140311
TU1300070 lncRNA upstream 16729 7208972 ~ 7210810 (-) False G1140311
TU1300071 lncRNA upstream 16729 7208972 ~ 7210810 (-) True G1140311
XM_036940064.1 mRNA downstream 190342 6979139 ~ 7000354 (-) False LOC110513509
XR_005035428.1 mRNA downstream 316583 6872545 ~ 6874113 (-) True LOC118938173
XM_036940057.1 mRNA downstream 337393 6842471 ~ 6853303 (-) False LOC110494877
XR_005035427.1 mRNA downstream 337958 6842471 ~ 6852738 (-) False LOC110494877
XM_036940080.1 mRNA upstream 92473 7284716 ~ 7290833 (-) True LOC110485501
XM_036940079.1 mRNA upstream 124071 7316314 ~ 7403758 (-) True LOC110519431
XR_005035433.1 mRNA upstream 148833 7341076 ~ 7341680 (-) True LOC118938181
XM_036942565.1 mRNA upstream 221183 7413426 ~ 7423027 (-) False LOC118938520
XR_005035432.1 mRNA upstream 242243 7434486 ~ 7436102 (-) True LOC118938180
TU1299913 other downstream 109241 6934590 ~ 7081455 (-) False LOC110513509
TU1299928 other downstream 110669 6934032 ~ 7080027 (-) False LOC110513509
TU1299907 other downstream 114045 6927702 ~ 7076651 (-) False LOC110513509
TU1300005 other downstream 148176 7038877 ~ 7042520 (-) True G1140269
TU1300008 other downstream 149006 7040696 ~ 7041690 (-) True G1140270
TU1300105 other upstream 53469 7245712 ~ 7246650 (-) True G1140343
TU1300138 other upstream 275603 7467846 ~ 7695746 (-) True G1140367
TU1300132 other upstream 310148 7502391 ~ 7504699 (-) True LOC110493310
TU1300151 other upstream 467454 7659697 ~ 7660321 (-) False G1140368
TU1300663 other upstream 866703 8058946 ~ 8066712 (-) True LOC110485610

Expression Profile