RNA id: TU1300067


Basic Information

Item Value
RNA id TU1300067
length 1688
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id G1140311
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7208972 ~ 7210810 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagaatccTACCGtcaaaataaagagagagaaaagagagggttGCATAATTTGTTTGTTTATCCATCTTTAATACGAGGGTCCTCAGATAAATCTCTTGTGCAGGGCTCTGTTCAAGATCACAAATGTTGTGCAACGTTACCCGAAAACAGCTTTTGTGACCTTAAAGATCAACTAGCgccggggtgaagtttcccctaggtacagatctaggatcagcttgacCTCCCTCAATCATAACCTTAACCGCTAGTGGGGAAAATGCTAAGCTGCCCCAGGATCAGCAtttaggggaaacttcaccccggcTCCATGAGTCTGTTAATGCTGGACGTCACCACGGTTGAGAACACAGCGAGCTTGTAAACGTAGCCTACGTATGTAGCCACTTCTCAAAATGTCTGCCATACTGTCCTCATCGGCTGTGTGAATGTAGCCTCAGACGACCATCCTGACCGCTGAGCTCTCAGTTGGTCTCACTTCATTTCATCCGTGTAGCAAAACAGATTGTAAGCGTGTGATATCAGGATGGTCGTATGAGGTTAGGGTCAATGTATCCTCAagataaaaagagagaaaaataggaTGTATTCAGAACGTGAAGAAAGTAAACAGGTTTTAGCTCCCACATAAACATTCAGTCACCAGTCaccaggaaacaggaaacaggaaacaggaaacacccTTTCCTTGTTTTTGTCTGTATTTCTttcattttcttattttttctgaATCCGAGAGAAAAATAAATTCCACGTCTGATTCATCAAGCTCAGGTTGTCTCGGATCGTTCGTTCATGTCAAACGACATGGATGGATCGGTTGCCTAGTAACGGAAGGCCAACCAACAGAGCAGAGAAAACAAACAACCAAATGTACATTTTTAGAACTAAAAGGGTTTTTTATCAACAACAAGAACAAAAGAAGAAAAATGATTCAATCCAACGACAGCCTCCCACagcggcaccctattccctctatagggcactaccaaaagttatagtgcactaccagacgtagtacactatatagggaatagggtgcaatttgggaaggAGATTGGATATTTGCATGGATCAGTCTAGTAACAGTTCtgtcaatatacacacacacacaaacacaatgtagtaatagcgctcacacacacacacatctctttaGACAGAAACCACTTTAGACAgaaaccactcacacacacacacatctcttaaGACAGAAACCACTCACACTGTATAGTACAGACTTCCAGACAAACCCCAACAGTCAGCCAGATCAACCCCAGAGTAGTATGGTGTGTGGTGGGGATCAGTTGACCGGGGTGTCCGTCAGTATCTGGAGGAGTTGGCATCATTTCCTCAAACATGGGGTGGGGGGCTTGGTCAGTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgaggcagTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgaggcagTGGAGGAGTGGTGTGTGTAGggcaggtggggagagagagaggtgtgtgtgtagttagatagaggagtgtgtgtgtagtcagatAGGGTCAGGGGGGGGGTGAGGACTATACATGTGTCTCTCAGGAGATGGTGGAGAACTCTTTGAGCAGGAGGTCCTGACTCAGTGTGTTCAGAGACACATTCTTCCTCACATTCAGACTGATGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1300054 lncRNA downstream 54699 7147582 ~ 7154273 (-) True G1140300
TU1300051 lncRNA downstream 62249 7146377 ~ 7146723 (-) True G1140298
TU1300050 lncRNA downstream 63058 7145714 ~ 7145914 (-) True G1140297
TU1300047 lncRNA downstream 70869 7137314 ~ 7138103 (-) True G1140294
TU1300023 lncRNA downstream 75178 7131544 ~ 7133794 (-) True G1140272
TU1300095 lncRNA upstream 22812 7233622 ~ 7233985 (-) True G1140333
TU1300109 lncRNA upstream 38667 7249477 ~ 7251992 (-) False G1140347
TU1300110 lncRNA upstream 38667 7249477 ~ 7251992 (-) True G1140347
TU1300118 lncRNA upstream 52399 7263209 ~ 7264346 (-) True G1140353
TU1300163 lncRNA upstream 71156 7281966 ~ 7282466 (-) True G1140378
XM_036940064.1 mRNA downstream 208618 6979139 ~ 7000354 (-) False LOC110513509
XR_005035428.1 mRNA downstream 334859 6872545 ~ 6874113 (-) True LOC118938173
XM_036940057.1 mRNA downstream 355669 6842471 ~ 6853303 (-) False LOC110494877
XR_005035427.1 mRNA downstream 356234 6842471 ~ 6852738 (-) False LOC110494877
XM_036940080.1 mRNA upstream 73906 7284716 ~ 7290833 (-) True LOC110485501
XM_036940079.1 mRNA upstream 105504 7316314 ~ 7403758 (-) True LOC110519431
XR_005035433.1 mRNA upstream 130266 7341076 ~ 7341680 (-) True LOC118938181
XM_036942565.1 mRNA upstream 202616 7413426 ~ 7423027 (-) False LOC118938520
XR_005035432.1 mRNA upstream 223676 7434486 ~ 7436102 (-) True LOC118938180
TU1300085 other downstream 16729 7190696 ~ 7192243 (-) True G1140323
TU1299913 other downstream 127517 6934590 ~ 7081455 (-) False LOC110513509
TU1299928 other downstream 128945 6934032 ~ 7080027 (-) False LOC110513509
TU1300105 other upstream 34902 7245712 ~ 7246650 (-) True G1140343
TU1300138 other upstream 257036 7467846 ~ 7695746 (-) True G1140367
TU1300132 other upstream 291581 7502391 ~ 7504699 (-) True LOC110493310
TU1300151 other upstream 448887 7659697 ~ 7660321 (-) False G1140368
TU1300663 other upstream 848136 8058946 ~ 8066712 (-) True LOC110485610

Expression Profile