RNA id: TU1300118


Basic Information

Item Value
RNA id TU1300118
length 1105
lncRNA type intronic
GC content 0.43
exon number 2
gene id G1140353
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7263209 ~ 7264346 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTTGGCATGAGAACCAGGCCTTGTCCTTAAtggtaccttattccctatatagtgtcctatGCTTAACCAGATAGTGTaccatacagggaatagggtgccacttgtgACGCGGTTATAGTGAGATATTATACATAATACATGACAAGCTGCTCATAAACCCAGTCCAACGCTATGATGCTTCACTCATAAACCCAGTCCAACGCTATGATGCTTCACTCATAAACCCAGTCCAACGCTATGATGCTTCACTCATAAACCCAGTCCAACGCTATGATGCTTCACTCATAAACCCATTCCAACGCTATGATGCTTCACTCATAAACCCAGTCCCACGCTATGATGCTTCACTCATAAACCCAGTCCAACGCTATGATGCTTCACTCATAAACCCAGTCCAACGCTATGATGCTTCACTCATAAACCCAGTCCAACGCTATGATGCTTCACTCATTAGGGATTAATCAATACCATGTATCAATAATCAATCCATCAAATGTAGTTTGGAAAGTCAGGCCAGCCTGAATGGATcgtcatttcagtcatttagtaAACTCTACAATTCACATTGCTTCCTATCTCACTCATCCTCATAGCACGTACAGTACATGaccacaagtatgtggacacctgcatgtcgaacatctcattccagaatcatgggcattaatatggagttggtcccccatttgctgctataacagcctccattctacTGGgaaagcagtttggaactcagtagtgagtgtttcaACCGAGGCCAGAGGAGTTTTATGAGCTctccagtaaggccattctactgtcaatgtttgtctatggagattgcatggctgtgagatttgatttgatacacttgtaagcaacgggtgtggctgaaatagccaaatccactaatttgaaggggtgtccacatactttagtatatatagtgtattgatatggtagTTTCTATAATGGTACCTCATCAGCATAACGTCAAATCTCCTCTTTAACATGAACAAATGTGTGGAATGTCATTCACTTCAGCCAATGAGCATGGCACGCTAAGGCAATCCCACCCCGCTGTCTGATTAACCTATGGGCACGCTAAGGCAATCCCACGCCGC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1300109 lncRNA downstream 11217 7249477 ~ 7251992 (-) False G1140347
TU1300110 lncRNA downstream 11217 7249477 ~ 7251992 (-) True G1140347
TU1300095 lncRNA downstream 29224 7233622 ~ 7233985 (-) True G1140333
TU1300067 lncRNA downstream 52399 7208972 ~ 7210810 (-) False G1140311
TU1300163 lncRNA upstream 17620 7281966 ~ 7282466 (-) True G1140378
TU1300194 lncRNA upstream 47392 7311738 ~ 7315568 (-) True G1140404
TU1300157 lncRNA upstream 58353 7322699 ~ 7368886 (-) True G1140372
TU1300201 lncRNA upstream 60434 7324780 ~ 7326845 (-) True G1140408
TU1300206 lncRNA upstream 63303 7327649 ~ 7432227 (-) True G1140410
XM_036940064.1 mRNA downstream 262855 6979139 ~ 7000354 (-) False LOC110513509
XR_005035428.1 mRNA downstream 389096 6872545 ~ 6874113 (-) True LOC118938173
XM_036940057.1 mRNA downstream 409906 6842471 ~ 6853303 (-) False LOC110494877
XR_005035427.1 mRNA downstream 410471 6842471 ~ 6852738 (-) False LOC110494877
XM_036940080.1 mRNA upstream 20370 7284716 ~ 7290833 (-) True LOC110485501
XM_036940079.1 mRNA upstream 51968 7316314 ~ 7403758 (-) True LOC110519431
XR_005035433.1 mRNA upstream 76730 7341076 ~ 7341680 (-) True LOC118938181
XM_036942565.1 mRNA upstream 149080 7413426 ~ 7423027 (-) False LOC118938520
XR_005035432.1 mRNA upstream 170140 7434486 ~ 7436102 (-) True LOC118938180
TU1300105 other downstream 16559 7245712 ~ 7246650 (-) True G1140343
TU1300085 other downstream 70966 7190696 ~ 7192243 (-) True G1140323
TU1299913 other downstream 181754 6934590 ~ 7081455 (-) False LOC110513509
TU1300138 other upstream 203500 7467846 ~ 7695746 (-) True G1140367
TU1300132 other upstream 238045 7502391 ~ 7504699 (-) True LOC110493310
TU1300151 other upstream 395351 7659697 ~ 7660321 (-) False G1140368
TU1300663 other upstream 794600 8058946 ~ 8066712 (-) True LOC110485610
TU1301574 other upstream 1066789 8331135 ~ 8332518 (-) True G1141490

Expression Profile