RNA id: TU1300163


Basic Information

Item Value
RNA id TU1300163
length 333
lncRNA type inter_gene
GC content 0.26
exon number 2
gene id G1140378
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7281966 ~ 7282466 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtactattctattacagtattatactattctattacagtatacagtcctGTACTATTCTATTACATTATACAGTCCTGTACtattctattacagtatacagtactgtactattctattacagtatacagtactgtactattctattacattatacagtactgtactattctattacattatacagtactgtactattctattaCATTATACAGTATTGTACTAttttattacagtatacagtactgtactattttattacagtatacagtactgtactattacagtatacagtactattctattacagtatacagtcctgtactattctatta

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1300118 lncRNA downstream 17620 7263209 ~ 7264346 (-) True G1140353
TU1300109 lncRNA downstream 29974 7249477 ~ 7251992 (-) False G1140347
TU1300110 lncRNA downstream 29974 7249477 ~ 7251992 (-) True G1140347
TU1300095 lncRNA downstream 47981 7233622 ~ 7233985 (-) True G1140333
TU1300070 lncRNA downstream 71156 7208972 ~ 7210810 (-) False G1140311
TU1300194 lncRNA upstream 29272 7311738 ~ 7315568 (-) True G1140404
TU1300157 lncRNA upstream 40233 7322699 ~ 7368886 (-) True G1140372
TU1300201 lncRNA upstream 42314 7324780 ~ 7326845 (-) True G1140408
TU1300206 lncRNA upstream 45183 7327649 ~ 7432227 (-) True G1140410
TU1300172 lncRNA upstream 58444 7340910 ~ 7352798 (-) True G1140387
XM_036940064.1 mRNA downstream 281612 6979139 ~ 7000354 (-) False LOC110513509
XR_005035428.1 mRNA downstream 407853 6872545 ~ 6874113 (-) True LOC118938173
XM_036940057.1 mRNA downstream 428663 6842471 ~ 6853303 (-) False LOC110494877
XR_005035427.1 mRNA downstream 429228 6842471 ~ 6852738 (-) False LOC110494877
XM_036940080.1 mRNA upstream 2250 7284716 ~ 7290833 (-) True LOC110485501
XM_036940079.1 mRNA upstream 33848 7316314 ~ 7403758 (-) True LOC110519431
XR_005035433.1 mRNA upstream 58610 7341076 ~ 7341680 (-) True LOC118938181
XM_036942565.1 mRNA upstream 130960 7413426 ~ 7423027 (-) False LOC118938520
XR_005035432.1 mRNA upstream 152020 7434486 ~ 7436102 (-) True LOC118938180
TU1300105 other downstream 35316 7245712 ~ 7246650 (-) True G1140343
TU1300085 other downstream 89723 7190696 ~ 7192243 (-) True G1140323
TU1299913 other downstream 200511 6934590 ~ 7081455 (-) False LOC110513509
TU1300138 other upstream 185380 7467846 ~ 7695746 (-) True G1140367
TU1300132 other upstream 219925 7502391 ~ 7504699 (-) True LOC110493310
TU1300151 other upstream 377231 7659697 ~ 7660321 (-) False G1140368
TU1300663 other upstream 776480 8058946 ~ 8066712 (-) True LOC110485610
TU1301574 other upstream 1048669 8331135 ~ 8332518 (-) True G1141490

Expression Profile