RNA id: TU1300154


Basic Information

Item Value
RNA id TU1300154
length 1245
lncRNA type read_through
GC content 0.49
exon number 7
gene id G1140370
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7415596 ~ 7451669 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCTAACCACTGACCCAGGGTATGCAGGTCGTGTGGAGTACACTGGAACATACAGAGGTCCCTTCACCCTGAGAATCACAGATCTGAGAGAGGAGGACTCAGCTGAGTATCGCTTCACTTTTAAAACATACAGCATTGAATGGGGTCATAGTTTCCCAGGAACAACTCTGACTGTCacagACctgcaggtgaaggtgactcCTGGCACAGTGACAGAAGGATCATGGGTTATACTGACgtgtagcaccacctgtactctgactgacaaccccaaccccacctacatctggtacaagaatGGAGAAGAGCTATTTTCTGACTCCTCTCCCGAGTATCAATACTCAGTCAGTAGAGGAGGTTCTGACAACTACTCCTGTGCCTTAAGAGGCCATGACAAACTTAGCTCTCCTGAAGTCACAGTGGATACTTCTTCTCTGAACTGCTTGAGTGTGACCTACACCAGTATAAGCATCTGTTCCTTGATACCATCCGTGGACCTGCCTTGCACTGCCATATATCCCACAGACctgcaggtgaaggtgactcCTGACACAAAGGCAGGGAAGAggacactgacctgtagcaccacctgtactctgactgacaaccccacctacatctgggACAGGAACGGACAGTGTCTTGCTTGGCTCACTTCCCAACAACACTCTGTCTGGAGTTCTGAAACAGAGAGTTACTCCTGTGCTGTTAAAGGCCATGAGGATCTCCGctctcctgcagtgtgtgttCAGGGTCACAACTGCTGGAGGGTGACTTACACCAAGAGGAGAATCTGTGTCTTGAAGGGCTCCACAGTGGACATATCCTGCTCTTACACTCATCCCACTAGTTATATAGAACAAGGTTCATTCTGGTTTACACAGAAAGACCCTGTAGATGTCAGGTCATATCCAGAGTATGCAGGTCGTGTGGAGTACAATAGGAACACAGAGAACCACCACACCATGACAATAACACACCTGACAGAGAAGGACTCGGCTGAATACAAATTCAGATTACTAACGACAGATGAGGGGAGATTTTCTGGCCTTCCTGGTGTGATGTTGACTGTCACAGatatcctgttggagatggatcCTACGTCTGtgtcagagggggagagagtcacaCTGAGATGTAGAACCAAATGTACAGTCGGTCtcaaccccacctacatctggtacaagaacggacaaAGTCTGACCAACCCAGTCACCAGTTATAACAGCCTGATCCTAGACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1300157 lncRNA downstream 46710 7322699 ~ 7368886 (-) True G1140372
TU1300172 lncRNA downstream 62798 7340910 ~ 7352798 (-) True G1140387
TU1300201 lncRNA downstream 88751 7324780 ~ 7326845 (-) True G1140408
TU1300194 lncRNA downstream 100028 7311738 ~ 7315568 (-) True G1140404
TU1300163 lncRNA downstream 133130 7281966 ~ 7282466 (-) True G1140378
TU1300251 lncRNA upstream 6558 7458227 ~ 7461103 (-) True G1140448
TU1300133 lncRNA upstream 38516 7490185 ~ 7504699 (-) False LOC110493310
TU1300263 lncRNA upstream 47533 7499202 ~ 7681666 (-) True G1140457
TU1300264 lncRNA upstream 57564 7509233 ~ 7510495 (-) True G1140458
TU1300267 lncRNA upstream 63620 7515289 ~ 7646844 (-) True G1140461
XM_036940079.1 mRNA downstream 11838 7316314 ~ 7403758 (-) True LOC110519431
XR_005035433.1 mRNA downstream 73916 7341076 ~ 7341680 (-) True LOC118938181
XM_036940080.1 mRNA downstream 124763 7284716 ~ 7290833 (-) True LOC110485501
XM_036940064.1 mRNA downstream 415242 6979139 ~ 7000354 (-) False LOC110513509
XR_005035428.1 mRNA downstream 541483 6872545 ~ 6874113 (-) True LOC118938173
XM_036940081.1 mRNA upstream 48699 7500368 ~ 7534632 (-) False LOC110493310
XM_036940091.1 mRNA upstream 78394 7530063 ~ 7564833 (-) True LOC118938177
XR_005035431.1 mRNA upstream 94237 7545906 ~ 7546579 (-) False LOC118938179
XR_005035430.1 mRNA upstream 115278 7566947 ~ 7567941 (-) True LOC118938178
XM_036942567.1 mRNA upstream 127005 7578674 ~ 7654174 (-) False LOC118938521
TU1300105 other downstream 168946 7245712 ~ 7246650 (-) True G1140343
TU1300085 other downstream 223353 7190696 ~ 7192243 (-) True G1140323
TU1299913 other downstream 334141 6934590 ~ 7081455 (-) False LOC110513509
TU1300138 other upstream 16177 7467846 ~ 7695746 (-) True G1140367
TU1300132 other upstream 50722 7502391 ~ 7504699 (-) True LOC110493310
TU1300151 other upstream 208028 7659697 ~ 7660321 (-) False G1140368
TU1300663 other upstream 607277 8058946 ~ 8066712 (-) True LOC110485610
TU1301574 other upstream 879466 8331135 ~ 8332518 (-) True G1141490

Expression Profile