RNA id: TU1300151



Basic Information


Item Value
RNA id TU1300151
length 525
RNA type TUCP
GC content 0.43
exon number 2
gene id G1140368
representative False

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 7659697 ~ 7730493 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GATGTATgtcaatatatatattgtttattaTTCTAAATGAACCTGTCCAATACATCTATAACATTGAGTCTCATTATGGTTTCAGGAATTGATCAGTTGCATTTTGTTTCAGGTGTTGTGGGTGAGAGCTGTATGAATGTGACTTACACCCATCAGAGTATCTGTGCTTTGAAAGGGTCAACAGTGGACATATCCTGCTTTTACACACATCCCAGTTGGCATAACGTCATAGAAGTGTCCTGGTTCAACAAATGGGAGTCTGGTGTCACTAAAGACCTGAGCCTGAACCCAGAGTATGCAGATCGTGTGGAATACCATCAACAAACAGACAAGGGCTCCACCCTGAGAATCACAGACCTGAGAGAAAGTGACTCAACTGAGTACAAGTTCAGATTTACAACTGATGAGGCAAGATGGGGGTACAGCTTCCCTGGAACAACTCTGACTGTCACAGGTTCTCAGGTGGAGGTGACTCCTAAATGGAGATCAGAGTCGaagacactgtcctgtatcaccacctgtact

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1300267 lncRNA downstream 12853 7515289 ~ 7646844 (-) True G1140461
TU1300296 lncRNA downstream 17476 7608564 ~ 7642221 (-) True G1140486
TU1300236 lncRNA downstream 36697 7407978 ~ 7623000 (-) True G1140436
TU1300282 lncRNA downstream 88842 7569851 ~ 7570855 (-) True G1140473
TU1300277 lncRNA downstream 112571 7546739 ~ 7547126 (-) True G1140471
TU1300308 lncRNA upstream 5390 7665711 ~ 7667999 (-) True G1140498
TU1300309 lncRNA upstream 5596 7665917 ~ 7672113 (-) True G1140499
TU1300315 lncRNA upstream 36226 7696547 ~ 7710867 (-) True G1140504
TU1300338 lncRNA upstream 90473 7750794 ~ 7751003 (-) True G1140526
TU1300351 lncRNA upstream 96616 7756937 ~ 7761076 (-) True G1140531
XM_036942567.1 mRNA downstream 5523 7578674 ~ 7654174 (-) False LOC118938521
XR_005035430.1 mRNA downstream 91756 7566947 ~ 7567941 (-) True LOC118938178
XM_036940091.1 mRNA downstream 94864 7530063 ~ 7564833 (-) True LOC118938177
XR_005035431.1 mRNA downstream 113118 7545906 ~ 7546579 (-) False LOC118938179
XM_036940081.1 mRNA downstream 125065 7500368 ~ 7534632 (-) False LOC110493310
XM_036940086.1 mRNA upstream 12451 7672772 ~ 7678768 (-) False LOC118938175
XM_036940089.1 mRNA upstream 12451 7672772 ~ 7695705 (-) False LOC118938175
XM_036940082.1 mRNA upstream 12451 7672772 ~ 7696461 (-) False LOC118938175
XM_036940083.1 mRNA upstream 12451 7672772 ~ 7696461 (-) False LOC118938175
XM_036940084.1 mRNA upstream 12451 7672772 ~ 7698366 (-) False LOC118938175
TU1300132 other downstream 154998 7502391 ~ 7504699 (-) True LOC110493310
TU1300105 other downstream 413047 7245712 ~ 7246650 (-) True G1140343
TU1300085 other downstream 467454 7190696 ~ 7192243 (-) True G1140323
TU1299913 other downstream 578242 6934590 ~ 7081455 (-) False LOC110513509
TU1300663 other upstream 398625 8058946 ~ 8066712 (-) True LOC110485610
TU1301574 other upstream 670814 8331135 ~ 8332518 (-) True G1141490
TU1301607 other upstream 766292 8426613 ~ 8452319 (-) True G1141517
TU1301677 other upstream 930644 8590965 ~ 8592898 (-) True G1141579
TU1301694 other upstream 999238 8659559 ~ 8667096 (-) True ncf4

Expression Profile