RNA id: TU1301607


Basic Information

Item Value
RNA id TU1301607
length 1937
RNA type TUCP
GC content 0.47
exon number 2
gene id G1141517
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 8426613 ~ 8452319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttgaattgagattctactttgtctctgtactggcgcttagcttgtttgatagccttgcggagggaatagctgcactgtttgtattcggtcatgttaccagacaccttgccctgattaaaagcagtggttcgcgctttcagtttcacacgaatgctgccatcaatccacggtttctggttagggaatgttttaatcgttgctatgggaacgacatcttcaacgcacgttctaatgaattcgcacaccgaatcagcgtattcgtcaatgttgttatctgacgcaatacgaaacatctcccagtccacgtgatggaagcagtcttggagtgtggagtcagcttggtcggaccagcgttggacagacctcagcgtgggagcctcttgttttagtttctgtctgtaggcagggatcaacaaaatggagtcgtggtcagcttttccgaaaggggggcggggcagggccttatatgcgtcgcggaagttagagtaacaatgatccaaggtctttcctcccctggttgcgcaatcgatatgctgataaaatttggggagtcttgttttcagattagccttgttaaaatccccagctacaatgaatgcagcctccagataaatcgtttccagtttgcagagagttaaataaagttcgttcagagccatcgatgtgtctgcttgggggggatatatatggctgtgattataatcgaagataattctcttggtagataatgtggtctacatttgattgtgaggaattctaaatcaggtgaacagaaggatttgagttcctgtatgtttctttcatcacaccatgtcacgttggccatgaggcatacgcccccgcccctcttcttaccagaaagatgtttgtttctgtcagcgcgatgtgtggagaaacccgttggctgcaccgcttcggatagagtctctccagtgagccatgtttcagtgaagcaaaggacgttacagtctctgatgtccctctggaatgctacccttgctcggatttcatcaaccttgttgtcaagagactggacattggcaagaagaatgctagggagtggtgcgcgctgtgcccgtttccggagtctgaccagaagaccgcctcgtttccctctctttcggagtcgtttttttgggtcgctgcataggatccactccgttgtcctgtttgtaaggcagaacacaggatccgcgtcgcgaaaaacatattcttggtcgtactgatggtgagttgatgctgatcttatattcagtagttcttctcgactgtatgtaatgaaacctaagatgacctggggtactaatgtaagaaataacacgtaaaaaaacaaaaaactgcatagtttcctaggaacgcgaagcgaggcggccatctctgtcggcgccggaaggcGAGATCTCAGGGAACAATGAGTTGTCACTAGGGGGTCAACTGTTTTGCTTATTGATGACATCATTGTCTACTCTTTCAATAAACAGCAGCATATGAATGCCCTTGATGATGTCTGTGAGTTCAGTGTTCTAGTATTGACTCTGTTGTAATGGCAGAAAACATTCACCGGGTGGCAGCACTGGGGCGGCTGAATTTCACAGCAGCATACTGGACATCCTCGTCCTGAATCTGGGGCTGAGGCAGCTGGAcggtggagtatagagacactTCCTGGTTTTTGGAGCCAGAGAAGTGGACGCTGGCATAGTGAACATCATCCTGGTTGTCTGTGTCAGCTGTCTGTGCTGCAGTAGAGGTCATGGCCATGCTTGAGATGTTGTCATACACTGGACTAGAGTCTCCCTGATGGAGAgagaggacagacaACATAAGGAGTAGAAATGTTCCACAAAGAATACACAGTCACCTTCTGTTTCCAACAGACTCACCTGTACATTCTCTGATGTATCTCTTGTGTCAGAGGTGGATTTGGAGGCCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1301618 lncRNA downstream 1080 8418982 ~ 8425533 (-) False G1141524
TU1301616 lncRNA downstream 5904 8419268 ~ 8420709 (-) True G1141524
TU1301610 lncRNA downstream 22511 8403726 ~ 8404102 (-) True G1141519
TU1301536 lncRNA downstream 42453 8383052 ~ 8384160 (-) False G1141464
TU1301590 lncRNA downstream 47791 8377561 ~ 8378822 (-) False G1141504
TU1301624 lncRNA upstream 11626 8463945 ~ 8464368 (-) True G1141530
TU1301625 lncRNA upstream 19734 8472053 ~ 8474297 (-) True G1141531
TU1301626 lncRNA upstream 22718 8475037 ~ 8475885 (-) True G1141532
TU1301635 lncRNA upstream 52603 8504922 ~ 8516728 (-) True G1141540
TU1301678 lncRNA upstream 147077 8599396 ~ 8599690 (-) True G1141580
XM_021556681.2 mRNA downstream 156923 8265675 ~ 8269690 (-) False atpv0e2
XM_036940112.1 mRNA downstream 163673 8225298 ~ 8262940 (-) False LOC110485582
XM_036940111.1 mRNA downstream 163811 8225298 ~ 8262802 (-) False LOC110485582
XM_036940110.1 mRNA downstream 163999 8225298 ~ 8262614 (-) False LOC110485582
XM_036940114.1 mRNA downstream 164449 8225298 ~ 8262164 (-) False LOC110485582
NM_001124505.1 mRNA upstream 202787 8655106 ~ 8696718 (-) False ncf4
XM_036940133.1 mRNA upstream 276904 8729223 ~ 8738426 (-) False LOC110515367
XM_036940134.1 mRNA upstream 276904 8729223 ~ 8738426 (-) False LOC110515367
XM_036940128.1 mRNA upstream 286416 8738735 ~ 8787123 (-) False LOC110515366
XM_036940130.1 mRNA upstream 286416 8738735 ~ 8787123 (-) False LOC110515366
TU1301574 other downstream 94095 8331135 ~ 8332518 (-) True G1141490
TU1300663 other downstream 359901 8058946 ~ 8066712 (-) True LOC110485610
TU1300138 other downstream 730867 7467846 ~ 7695746 (-) True G1140367
TU1300151 other downstream 766292 7659697 ~ 7660321 (-) False G1140368
TU1300132 other downstream 921914 7502391 ~ 7504699 (-) True LOC110493310
TU1301677 other upstream 138646 8590965 ~ 8592898 (-) True G1141579
TU1301694 other upstream 207240 8659559 ~ 8667096 (-) True ncf4
TU1301739 other upstream 277180 8729499 ~ 8731783 (-) True LOC110515367
TU1301766 other upstream 341538 8793857 ~ 8797212 (-) True G1141636
TU1301821 other upstream 507988 8960307 ~ 8964522 (-) False LOC110494947

Expression Profile