RNA id: TU1303056


Basic Information

Item Value
RNA id TU1303056
length 2111
RNA type TUCP
GC content 0.45
exon number 2
gene id G1142620
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10295744 ~ 10299367 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggaaatagagaaagacagatgtgagggaaatacagaaagacagacaggaagatgtatagagtgaagggggagagaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagataggggaaatacagaaagaaagacagacaggaagatgtatagagtgaagggagagacaggggaaatacagaaagacagacaggaagacgtatagagtgaagggagagagaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagacaggggaaatacagaaagacagacaggaagatgtatagagtgaagggggagagaggggaaatacaGAAAGACATACAGGAAGATGtatagagtgaagggagagacaggggaaataCAGAAAGACATACAGGAAGATGtatagagtgaagggagagagaggggaaatagagaaagacagacaggaagatgtatagagtgaagggagagaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagacaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagataggggaaatacagaaagaaagacagacaggaagatgtatagagtgaagggagagacaggggaaatacagaaagacagacaggaagacgtATAGAGTGAAGGAAGAGATAGGGGAaatacagaaagaaagacagacaggaagatgtatagagtgaagggagagacaggggaaatacagaaagacagacaggaagatgtacagagtgaagggagagacaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagacaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagacaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagataggggaaatacagaaagaaagacagacaggaagatgtatagagtgaagggagagacaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagacaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagagaggggaaatagagaaagacagacaggaagatgtatagagtgaagggagagatagTGGAaatacagaaagaaagacagacaggaagatgtatagagtgaagggagagagaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagacaggggaaatacagaaagacagacaggaagatgtatagagtgaagggggagagaggggaaatacaGAAAGACATACAGGAAGATGtatagagtgaagggagagacaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagagaggggaatacagaaagacagacaggaagatgtatagagtgaagggagagagaggggaaatagagaaagacagacaggaagatgtatagagtgaagggagagagaggggaaatacagaaagacagacaggaagatgtatagagtgaagggagagacttattctaaaatgaatgaaatacttttttttctcattaatctacacacatcccataatgacaaagcaaaaaccatttttttactcagtactttgttgaagcacctttggcagttatTTCAGCCTCTGGGTttcttgggtacgacgctacaagcttggcacacctgtatttgggaagtttctcccgtTCGTCTCTGccgatcctctcaagttctgtcaggctggatggggagcgtcgctgcacagctatttttaggtctctccagagatgttcgattgggttcaagtccgggcactggccgggccactcaagaacattcagagacttgtcccgaagccactcctgcgttgtcttggctgtgtgcttagaggtcgctgtcctgttggaaggtgaaccttcactccagtctgaggtcatgagcgctctggagcaggttttcatcaaggatctctctgtactttgctccgttcatctttctctcgatccagCATCCATGCTTCATCGtggggatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1303091 lncRNA downstream 15472 10279494 ~ 10280272 (-) False G1142646
TU1303092 lncRNA downstream 15472 10279494 ~ 10280272 (-) True G1142646
TU1303086 lncRNA downstream 25299 10270086 ~ 10270445 (-) True G1142642
TU1303077 lncRNA downstream 43506 10250727 ~ 10252238 (-) True G1142633
TU1302988 lncRNA downstream 147614 10147721 ~ 10148130 (-) True G1142569
TU1303116 lncRNA upstream 55114 10354481 ~ 10354867 (-) True G1142670
TU1303175 lncRNA upstream 175239 10474606 ~ 10475236 (-) True G1142724
TU1303179 lncRNA upstream 178970 10478337 ~ 10479324 (-) True G1142727
TU1303181 lncRNA upstream 180544 10479911 ~ 10483010 (-) False G1142728
TU1303182 lncRNA upstream 180544 10479911 ~ 10485032 (-) False G1142728
XM_036940200.1 mRNA downstream 193189 10097947 ~ 10102555 (-) False lgals2b
XR_005035450.1 mRNA downstream 221123 10015869 ~ 10074621 (-) True LOC118938203
XM_036940192.1 mRNA downstream 596272 9695450 ~ 9699472 (-) True LOC118938202
XM_036940190.1 mRNA downstream 600724 9671928 ~ 9695020 (-) False LOC118938201
XM_036940186.1 mRNA downstream 643589 9630367 ~ 9652155 (-) False LOC118936521
XM_036942304.1 mRNA upstream 14356 10313723 ~ 10322183 (-) True LOC110516362
XM_036942342.1 mRNA upstream 334782 10634149 ~ 10657332 (-) False LOC110487259
XM_036942321.1 mRNA upstream 397659 10697026 ~ 10712363 (-) False LOC110485344
XM_036942320.1 mRNA upstream 397659 10697026 ~ 10717367 (-) False LOC110485344
XM_036942322.1 mRNA upstream 403424 10702791 ~ 10717367 (-) True LOC110485344
TU1302900 other downstream 193226 10097922 ~ 10102518 (-) True lgals2b
TU1302452 other downstream 313478 9980348 ~ 9982266 (-) True G1142121
TU1302244 other downstream 626562 9667245 ~ 9669182 (-) True G1141973
TU1302102 other downstream 914695 9358079 ~ 9381049 (-) True LOC110485597
TU1302004 other downstream 1079446 9215140 ~ 9216298 (-) True G1141790
TU1303216 other upstream 265093 10564460 ~ 10566465 (-) True G1142757
TU1302932 other upstream 521057 10820424 ~ 10822367 (-) True LOC110494931
TU1303981 other upstream 858519 11157886 ~ 11159261 (-) True G1143380
TU1304064 other upstream 981695 11281062 ~ 11282092 (-) True G1143449
TU1304123 other upstream 1128323 11427690 ~ 11429365 (-) True LOC110485554

Expression Profile