RNA id: TU1303216


Basic Information

Item Value
RNA id TU1303216
length 1959
RNA type TUCP
GC content 0.39
exon number 2
gene id G1142757
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10564460 ~ 10566465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cttctttactgtctgttgtcaccttctttactgtctgttgtcatcttcttttactgtctgttgtcaccttctttactgtctgttgtcaccttcttctttactgtctgttgtcaccttcttcactgtctgttgtcaccttcttcttttactgtctgttgttaccttcttctttactgtctgttgtcaccttcttctttactgtctgttgtcaccttcttctttactgtctCTTGTCACGTTCTTCTTTattgtctgttgtcaccttcttcttttactgtctgttgtcaccttcttattttactgtctgttgtcaccgtctttactgtctgttgtcaccttcttctttactgtctgttgtcaccttcttcttttactgtctgttgttaccttcttctttactgtctgttgtcaccttcttctttactgtctgttgtcaccttcttcttttactggatggtgtcaccttcttctttactgtctCTTGTCACCttcttttactgtctgttgtcaccttattttactgtctgttgttacCTTCTTCTTTagctgtctgttgtcaccttcttctttactgtatgttgtcaccttatttaactgtctgttgtcaccttcttctttactgtctgttgtcaccttcttttactgtctgttgtcaccttcttctttactgtctgttgtcaccttcttctttactgtctgttgtcaccttcttctttTACTGTCTGTTATCAccttctttactgtctgttgtcaccttcttctttactgtctgttgtcaccttctttactgtctgttgtcaccttcttctttactgtctgttgtcaccttcttctttactgtctgttgtcaccttctttactgtctgttgtcatcttcttttactgtctgttgtcaccttctttactgtctgttgtcaccttcttctttactgtctgttgtcaccttctttactgtctgttgtcaccttcttcttttactgtctgttgttaccttcttctttactgtctgttgtcaccttcttatttactgtctgttgtcaccttcttctttactgtctgttgtcaccttcttttactgtctgttgttaccttcttctttactgtatgttgtcaccttcttctttactgtttgttgtcaccttcttcttttactgtcaccttcttctttactgtctgttgtcaccttcttttactgtctgttgtcaccttcttttactgtctgttgtcaccttcttttACTGTATGTTGTTACCTTCTTCTTTagctgtctgttgtcaccttcttctttactgtatgttgtcaccttatttaactgtctgttgtcaccttcttctttactgtctgttgtcaccttcttttactgtctgttgttaccttcttctttactgtctgttgttaaattcttctttactgtctgttgtcaccttcttctttactgtctgttgtcacctctTCAATACTGTCTGTTGTTaccttcttctttactgtctgttgtcaccttctttactgcctgttgtcaccttcttttactgtctgttgtcaccttcttctttactgtatgttgtcaccttctttactgtctgttgtcaccttcttctttactgtctgttgtcacctctTCAATACTGTCTGTTGTTACCTCCTTCTTTACTGCCTGTTGTCACCttcttttactgtctgttgtcaccttcttctttactgtctgttgttaccttcttttactgtctgttgtcaccttctttaACTGTCTGGTGTCACCTTGTTTTACtctctgttgtcaccttcttctgTCGGTCTCTTTACATCCCTGTCCTCTTTGTCTAAGTCCTAGTCAGTTGTCagagccagacacacacagatccatTCCATATTCCTTCCTTCAATCTGAATATCTTATTAGCTACAGTAAGTCTAACCCCAATGccttgtgtgtgttggtgtgtgtgtgtgtatacgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1303182 lncRNA downstream 79428 10479911 ~ 10485032 (-) False G1142728
TU1303184 lncRNA downstream 79428 10479911 ~ 10485032 (-) True G1142728
TU1303181 lncRNA downstream 81450 10479911 ~ 10483010 (-) False G1142728
TU1303179 lncRNA downstream 85136 10478337 ~ 10479324 (-) True G1142727
TU1303175 lncRNA downstream 89224 10474606 ~ 10475236 (-) True G1142724
TU1303235 lncRNA upstream 50737 10617202 ~ 10617475 (-) True G1142776
TU1303203 lncRNA upstream 67754 10634219 ~ 10634374 (-) True LOC110487259
TU1303244 lncRNA upstream 80314 10646779 ~ 10647803 (-) True G1142783
TU1302916 lncRNA upstream 104305 10670770 ~ 10671856 (-) True G1142506
TU1303261 lncRNA upstream 105523 10671988 ~ 10672980 (-) False G1142798
XM_036942304.1 mRNA downstream 242277 10313723 ~ 10322183 (-) True LOC110516362
XM_036940200.1 mRNA downstream 461905 10097947 ~ 10102555 (-) False lgals2b
XR_005035450.1 mRNA downstream 489839 10015869 ~ 10074621 (-) True LOC118938203
XM_036940192.1 mRNA downstream 864988 9695450 ~ 9699472 (-) True LOC118938202
XM_036940190.1 mRNA downstream 869440 9671928 ~ 9695020 (-) False LOC118938201
XM_036942342.1 mRNA upstream 67684 10634149 ~ 10657332 (-) False LOC110487259
XM_036942321.1 mRNA upstream 130561 10697026 ~ 10712363 (-) False LOC110485344
XM_036942320.1 mRNA upstream 130561 10697026 ~ 10717367 (-) False LOC110485344
XM_036942322.1 mRNA upstream 136326 10702791 ~ 10717367 (-) True LOC110485344
XM_036942353.1 mRNA upstream 174340 10740805 ~ 10762141 (-) False LOC110487189
TU1303056 other downstream 265093 10295744 ~ 10299367 (-) False G1142620
TU1302900 other downstream 461942 10097922 ~ 10102518 (-) True lgals2b
TU1302452 other downstream 582194 9980348 ~ 9982266 (-) True G1142121
TU1302244 other downstream 895278 9667245 ~ 9669182 (-) True G1141973
TU1302102 other downstream 1183411 9358079 ~ 9381049 (-) True LOC110485597
TU1302932 other upstream 253959 10820424 ~ 10822367 (-) True LOC110494931
TU1303981 other upstream 591421 11157886 ~ 11159261 (-) True G1143380
TU1304064 other upstream 714597 11281062 ~ 11282092 (-) True G1143449
TU1304123 other upstream 861225 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 889109 11455574 ~ 11494340 (-) True LOC118938427

Expression Profile