RNA id: TU1302912


Basic Information

Item Value
RNA id TU1302912
length 4359
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G1142502
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10733912 ~ 10738270 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggtagtccCTCCACGCTTGTCAGTTTTCcaccgtttggtgcctaatgaacacaaccctggatCCATCGAAATAGAACGGACTTGGAACCTCTAAccacctcaaactcaactctggacctcgaagccagtttcCACTGAatgttttcattgttcccctctaaaaccagggactgatttagacctgggacaccaggtgtgtgcaattaatcattaggtagaacagaaaaccagcaggctcggGACcgcgtagggtaagagttgagtacgGCTGCCTaacccattatgccatcattgacttgaatggggaggtCCGTTCTatagattctatttctatgcccgGATCACACTTCTGCCACCAAATACCACTCCACAGACCGTTCTAGAGGGACTAAATAGAGAGCGTGTTGACAAGGTGCCGAGGCTTTGGCTAGCGGTCTCTACTATACCGGACCGTTAGCGCTCACCCAAAGGTGCTTCAGTAAAGATTATTTCACCCTCTCTATTTCCCTTTTATTTGTCTGCGGTGCCGAGTGGAACCAGGTAGCGACAAGAAGCAACCCAGTGAGCACCAGACATTGAAATGGCGTATTGTCAACGTCTTGGGAAGACAGACGGGTAGATACATGGACATGACAAAGACAAGAAGCAATGTATTCCTGTCAGGATATAGGCTATGAATGAGTCGTAACTTGGGGCTGTGTACAGGCTCCAGCAGAGCTTACGTTAGCTATGGGGATCAACGGACTAAATATTTGGTCTCAAACACAATGGGGACTTCATCCCCAAAGCAAATACTGACAGGTCTTTTTGAATGTAGAATGAATGAATACAAGACAAGTCGAGACAGAAAGCAAAGCTCAACCACTGTCTCACTGATGTAACATTACGCTGCCCTCTATCGGTAGGATGATGGTAATGTCAGGCAGCGCAAGaagtcccccctccccccctgagTTGGAGTACCAACACCAGACACCAGGTGGGCGAGCACCTTATGAGCATCACAATCCAGCTATTCTCTTGTGGACAGACAGTTTTAGGCAATAATGTTACTTCTGGGTAACCGAGATCACAATCCAGCCAACATTTCCCTGGCTGGGACAGTTGTCATTCtataccatttagcagatgcttttatccaaagcgatttacagtcatgcgtgcatacattttacgtatgggtggtcccgggaattgaacccactatcctggcgttgcaagcgccatgctctaacAACTGAGCTGGATCACATGAGACGAGAGCCAAGCATGGTCAAGTGAAGGCGGAAGCTAATTTAACTTCCAGGGAATTCTGGATTTCAAAGAAATGTACAAGAACATAAAAAACAATGTCTGATGGATATTATAAATGGTTATTCCTAGTAAGGAATTTAAGAGATATAGTCCCTTAGGAGAGACTGACATACCAGCTAGTGGGGCTTCTACAGTCCATCATCCGTCGGTCTGTAAACCAACCAACCCTGTCTCCCTCCCAAAAGTACACAATGCAGTTTCAGTACTGTGTTCCCCCTTTTCGTGTCCAGCATCAAAACTGCCCCCTCCCCTTCATTACAGCACAATGCAAAAATATGTGGATCTCTTTCTCTAGCTATTTTACACTTTCAGAGTTCGACTTCCTCTTAATGACAGAACACTTGGCAAGTTTCTAAAACGTGTTAATGTTTGAATTAGTAATCAGGACCTAAAAAACACTACATAGTACATAGCTTCTCTTAGCAACACTAGTATTTACACACTAGCGTTGCTAGGAATTAGCTTGCAAAAAAACAGAATAGTCAGCTGGAAGACAGGAGTGAAATAAAATGACATTTCAACTTACTCTGCCGATTGTCTGTAGAGTTGGTCCTTATGCAGGGGGGAAATTAAGCAAGTAACATTTAGTAGAACAGAACTTAAACCCTGTCCAAACGTGGGTCTGTCGTCCCACTTCCTCTCTGCTTTGCTCGCGTCAAGATAAAAGTCTGGCACGTGCGCCATACCTGCACAAAAGAGCTTGcgagggacttttattttgacatgAGGTAAACAGAGAGGAACTGAAGTCCCGGAGGAACTGCATGGGGTCTACAAACAGACCGTTAATTATACGTCCCATTCTATGTTCTTTCTCCATTTCCCCCCTGAATAAAGACCAACCCGACGGACAAAGTTGAAATTGAATTTGACTTCTGGCTTCCAAGCTAATTCCTAGCAAGGATATTGTGTGAATACTAGCGTAGGTAAAAGCAGCTATACAGTACACATTTAAATCTGTAGAAATAAAAACATTGGTAAGTATCAACAGAAAAACAGCAACGTAATAACAACATTTCCTACAAAGCTCTTTTCTAAAATATGGTCTCtagtattttttaaatgtcatttCTGGCCCCGCGAAACAACTTCCAGCCACATTTAGAAATGGTGTGCTTGGCCAGTGTTCCTACAGGATCCCTCACTCACTCGTCCTCCTTTTCCTcgttctcctgtcccctctctcagTAGCATTGGACTTGATaaaagtcatttaaaaaaaaagacaaacatggttgtatcccaaatggcatcctattccttatttagtgcactacttttgaccagggtccatagggctctggtcaaaagtagtgcaatatttttttagggaatagggtgccatttggaacgtagaCTTGATTTCCAGGCTAGGAGGCCAGGGGTGTCTGTGGTaacgtcccaaaatggcaccctattcccaatatagtgcactacttttggtcagAGTCCTATGGGATGCcatatgggccctagtcaaaagtagtacagGTAATAGGGGATTGATTTCAGCTCTGCTATAATGAAACAGTCTGGATTTCCAGGCTGTCTGCCTGACGACTCACTACATACTTCAGTCAGGCAGCCAGCGTTGAAGTCGGTTGTGGTGACATCACAATGAGGGGTGTTGTGCAAAACAAAAGTCATTACCGATTGGAGCATCTCGAACCAATCAGAGTAAGCCAATGACACATTTTGAAAACGCAgctttacccacgtgtgttctggctctggcccaacccatcgctTTCTGGGACCAATCACAACTGTTTGAATGTGTTTGCGTTCTAGAAATCGTCAGATCCATGTTGTAGCGTTTGGCCGGAGCAAGGAGCCTGGGTAGGCAGGAAAAGGCTACGTCACCCCACCCCTTACATTAAGAAACAACTAAATATTTATCTTTGTTGCAAAAAGGCCATGGGACGAGCATCTTCTCCCTCTCAGCTGTCTTGACTGCAGTTAAGTACCAGAGGCCTGCCACAATGCTTCCTACGTCCTCAGACTCTAAACAAGCAGGAAGAAAGAGTAGCAccacacccccctcccctccatccataAGAGTTAGGGTAACAACCATGTATCTAGGAACGTATAGAATAgcgcccccccccctccatccgtAAGAGTTAGGGTAACAACCATGTATCTAGGAACGTATAGAATAgcaccactgtctctctcccttcctcccaactccctcccatcttcCCGCTCAAGTCTAGGGATTTCACATAAAAATAAAGTCAGTCAACTTGGAATAACAACAATCTTATTAGTATAAACATCTAAAATGGACTGTGTCTCACTGTATTAATATTTAGATAGAGAGACCACCGACAGGGAAATGTATACCACCATCTTCAACATCATCCTAGTCATCACTGCACTTTTATAAAACAGACCCATTGTCAGCCTGCAGTCTCCTGAAGGGAATGGACGCCTGGTTGGTTGGTTAGACACATGCATTGCCCGATGCAgagacatatatacagtaccagtcaaaagtttggacacacctactcattcaagagtttccttcaagattgttggaaaaagcattccaggtgaagctggttgagcgaatgccaagagtgtgcctaactgtcatcaaggcaaagggtggctatttgaagaatctcaaatatatatttgatttgtttaacactttttttggttactacatgattccatatgtgttatttcatagttctgatgtcttcactattattctacaaataaggaaaagccctggaatgagggctttttgactggtactgtatatacacacacacgcacacagactgtCACACCAGCACACAGGCAAAAAAGGACACACCTGGACCGACACACACACCAAGTCATCCTATCAGGCAGTCCCATCTGTGGTTTAGACAGTTACCACACCAAACAGCCCCCTTCCTCCTGCCAAACAAACATTCACTCTTACACACCAGTCATTCACATACACAACACGGCCGCCATTTTCAGACATTTAGCTTGCATcctaaacggcaccctattccctacattggcTCTGTCCCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1302920 lncRNA downstream 358 10733105 ~ 10733554 (-) True G1142510
TU1302923 lncRNA downstream 1395 10732106 ~ 10732517 (-) True G1142513
TU1303269 lncRNA downstream 17151 10715842 ~ 10716761 (-) True G1142804
TU1303266 lncRNA downstream 44722 10688162 ~ 10689190 (-) True G1142801
TU1303265 lncRNA downstream 51751 10680396 ~ 10682161 (-) True G1142800
TU1302910 lncRNA upstream 1232 10739502 ~ 10740062 (-) True G1142500
TU1302904 lncRNA upstream 2535 10740805 ~ 10741991 (-) True LOC110487189
TU1302925 lncRNA upstream 75753 10814023 ~ 10843369 (-) True G1142515
TU1302945 lncRNA upstream 87340 10825610 ~ 10829252 (-) True G1142535
TU1303303 lncRNA upstream 139728 10877998 ~ 10878203 (-) True G1142838
XM_036942320.1 mRNA downstream 16545 10697026 ~ 10717367 (-) False LOC110485344
XM_036942322.1 mRNA downstream 16545 10702791 ~ 10717367 (-) True LOC110485344
XM_036942321.1 mRNA downstream 21549 10697026 ~ 10712363 (-) False LOC110485344
XM_036942342.1 mRNA downstream 76580 10634149 ~ 10657332 (-) False LOC110487259
XM_036942304.1 mRNA downstream 411729 10313723 ~ 10322183 (-) True LOC110516362
XM_036942353.1 mRNA upstream 2535 10740805 ~ 10762141 (-) False LOC110487189
XM_036942352.1 mRNA upstream 2535 10740805 ~ 10762367 (-) False LOC110487189
XM_036942587.1 mRNA upstream 42071 10780341 ~ 10913542 (-) False LOC110494931
XM_036942357.1 mRNA upstream 243412 10981682 ~ 11101213 (-) True LOC118938429
XM_036942360.1 mRNA upstream 369276 11107546 ~ 11110630 (-) True LOC118938431
TU1303216 other downstream 167447 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 434545 10295744 ~ 10299367 (-) False G1142620
TU1302900 other downstream 631394 10097922 ~ 10102518 (-) True lgals2b
TU1302452 other downstream 751646 9980348 ~ 9982266 (-) True G1142121
TU1302244 other downstream 1064730 9667245 ~ 9669182 (-) True G1141973
TU1302932 other upstream 82154 10820424 ~ 10822367 (-) True LOC110494931
TU1303981 other upstream 419616 11157886 ~ 11159261 (-) True G1143380
TU1304064 other upstream 542792 11281062 ~ 11282092 (-) True G1143449
TU1304123 other upstream 689420 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 717304 11455574 ~ 11494340 (-) True LOC118938427

Expression Profile