RNA id: TU1303344


Basic Information

Item Value
RNA id TU1303344
length 846
lncRNA type inter_gene
GC content 0.49
exon number 3
gene id G1142867
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 10929368 ~ 10930669 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAGAGGGCAAGACACAGAGAGGGcacgagaaagggagaaagaggcggagggtgtggatagaggagaaagggagaaagaggcagagggtgtggatagaggagaaaaggagaaagaggcagagggtgtggatagaggagaaaaggagaaagaggcagagggtGTGGATAGAGAAGAaaaggagaaagaggcagagggtGTGGATAGAGAAGAaaaggagaaagaggcagagagtgtggatagaggagaaaaggagaaagaggcagagggtGTGGATAGAGAAGAaaaggagaaagaggcagagggtgtggatagaggagaaaaggagaaagaggcagagggtgtggatagaggagaaaaggagaaagaggcagagggtgtggatagaggagaaaaggagaaagaggcagagggtgtggatagaggagaaaaggagaaagaggcagaggatGTGGATAtaggagaaaaggagaaagaggcagagggtgtggatagaggagaaaaggagaaagaggcagagggtgtggatagaggagaaaaggagaaagaggcagagggtgtggatagaggagaaaaggagagcgaGATATTGAAGAACAATGTAGgacgagagaaagggagagatgttcagagaaggagagaggagaggacagagacagtggaaagggaatagagagggagagagatgttcagagaatgagagaggagaggacagagacagtggaaagggaatagagagggagagagatgttcagagaaggagagaggagaggacagagacagtggaaagggaatagagagggagagatatgtccagagaaggagagaggagaggacagagacagtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1303322 lncRNA downstream 30022 10898687 ~ 10899346 (-) True G1142849
TU1303304 lncRNA downstream 50260 10878844 ~ 10879108 (-) True G1142839
TU1303303 lncRNA downstream 51165 10877998 ~ 10878203 (-) True G1142838
TU1302925 lncRNA downstream 85999 10814023 ~ 10843369 (-) True G1142515
TU1302945 lncRNA downstream 100116 10825610 ~ 10829252 (-) True G1142535
TU1303351 lncRNA upstream 7121 10937790 ~ 10938758 (-) True G1142874
TU1303359 lncRNA upstream 13848 10944517 ~ 10945048 (-) True G1142880
TU1303314 lncRNA upstream 35333 10966002 ~ 10966478 (-) False G1142845
TU1303312 lncRNA upstream 36026 10966695 ~ 10967345 (-) True G1142845
TU1303310 lncRNA upstream 37742 10968411 ~ 10968885 (-) False G1142844
XM_036942587.1 mRNA downstream 15826 10780341 ~ 10913542 (-) False LOC110494931
XM_036942352.1 mRNA downstream 167001 10740805 ~ 10762367 (-) False LOC110487189
XM_036942353.1 mRNA downstream 167227 10740805 ~ 10762141 (-) False LOC110487189
XM_036942320.1 mRNA downstream 212001 10697026 ~ 10717367 (-) False LOC110485344
XM_036942322.1 mRNA downstream 212001 10702791 ~ 10717367 (-) True LOC110485344
XM_036942357.1 mRNA upstream 51013 10981682 ~ 11101213 (-) True LOC118938429
XM_036942360.1 mRNA upstream 176877 11107546 ~ 11110630 (-) True LOC118938431
XM_036942359.1 mRNA upstream 184466 11115135 ~ 11116092 (-) True LOC110485570
XR_005035707.1 mRNA upstream 301816 11232485 ~ 11233755 (-) False LOC118938432
XM_036942319.1 mRNA upstream 392974 11323643 ~ 11338104 (-) False LOC110485558
TU1302932 other downstream 107001 10820424 ~ 10822367 (-) True LOC110494931
TU1303216 other downstream 362903 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 630001 10295744 ~ 10299367 (-) False G1142620
TU1302900 other downstream 826850 10097922 ~ 10102518 (-) True lgals2b
TU1302452 other downstream 947102 9980348 ~ 9982266 (-) True G1142121
TU1303981 other upstream 227217 11157886 ~ 11159261 (-) True G1143380
TU1304064 other upstream 350393 11281062 ~ 11282092 (-) True G1143449
TU1304123 other upstream 497021 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 524905 11455574 ~ 11494340 (-) True LOC118938427
TU1304298 other upstream 869801 11800470 ~ 11811231 (-) False LOC110485539

Expression Profile