RNA id: TU1303973


Basic Information

Item Value
RNA id TU1303973
length 6971
lncRNA type antisense_over
GC content 0.45
exon number 6
gene id G1143378
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11103854 ~ 11157192 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggagaggtcgAGGTGGGGAAAGAGAAggtagaggggaagggagagagggggagggagaggagagggagacagaaagagagagagaaaaggggaaaggtagagagagaggctgtgaggGTTACAAATACAATCCATTGTATTATTTAGATTACTCTGTGATTGacacattcttcttcttcttctatgtatTTGAACAATACCATGTGCTTGTGCCTTCATTCCTGTAGGGGGGGTAAGAGTCGTCTTTCTTCTTATACACCAGCTGCTTCTGGTAGCCTTTCTGTATGTAGTTCATGGCCTCCACCCTGCGTTGCACCCCTACAGCCTCCCAGTCGTTGGAATGGTCCAGGTAGACAGTGGCTATAAGAGGCAGGGTGATGCTGGCTAGGTTCTGTTCCACACAGCCACCAGGCATACGGATCAAAGAGGCCAGAGAGTCACCGCTGATACTGTTGTCTATGGTATCAGCCAACAGGTTACCTGGTGggaggagcagagcagagtagagtagagcagagtagagtagagagtggagagagcagagcagagtagagcagagcagagtagagtagagagtggagagagcagagtagagagtagagtagagcagagtagagtagagagtagagtagagcaaagtagagtatagagtggagagagcagagtagagtagagagtggagagagcagagtagagtagagtggagagagcagagtagagtagagtggagagagcagagtagagtagagagtagagtagagcagagagtagagtagagcaaagtagagtatagagtggagagagcagagtagagtagagagtggagagagcagagtagagtagagaggagagagcagagtagagtagagtggagagagcagagtagagtagagtagagcagagtagagtagagtagagagtagagtagagcagagtagagtagagagagcagaATAGAGAATAGAATGGaaggaatggaatagaataggtTATGTGTCCACACAGCTGCTTTGGCTTCACAATGCCCATAACCAACCCAAAGGGTTAGAGGCACCCGCCAGCCACCATCTCTGTCTAATAAGGTAAACCTTGTTTCTCAGTTAGGCCTACCCCTGATGTTGATGAATGTCTCTGGTTGAGAGTTTGGAACCAGGGAGCCCAGCTCCACTTTGTCCACCTCCACTACCTGCCTCCCATCTGGGGGGAAACATAGTAAGAATACTTAGTAAAGGCTGTTTCTAAAGGGGACATGGTAATGGTGAGCATTAGGGTTAGAGATGATGAGTGTCTTAGTTCTGCTCACCGTTCCCTCCCTTGACAGAAGGATTCAATACAAAACTCTGCACTTTAGTCTTCTGCACTCCTTCCACCTGTTACAGGGTTTTGAAAACAGCTTTGAGATACCGGTCCTCGTGTCTTAGGTAAGGACACTGATTCACAGTCgctatatatattttatttattttattattattattatttatttttttaactaacATCTGAAATAGTCACCCACCACCACGCGTAGCTTCTTATTGACCCCGTCGCTACCCATAAACCCTTTGGCCATGGCAAGGACCTCCAGTAGCATCTCTCCGGCCTTGAGCGGTATGATGGTGTAGGGAACCACCAGGGACGAGCTGCCCTTCAACCTCACCTCCTGGGTGTGTTTCCCATTGAACGCCACACTGCACATGTCCTCTGTCTTCAGTAGCACCACCTTAACCTGGGTTGAGTAGAGGAGGAAACGGAGATGATCAAGACACAAAATGGCTGAGAGGAAGTGAGCAGAACTGGGTGGATTTCACATGTCCTCCGTCTTCAGTAGCACCATTGCTTCTAGGTAAGCTGAAAAGAGGAGGAAACTGGGACGGTCAAGACACAAAATGGCTGACAGTAATgggagggttaggagggttaaGACACAAAATGGCTGACAGTAATgggagggttaggagggttaaGACACAAAATGGCTGACAGTAATGGGAGGGTTAggagggttaaGACACAAAATGGCTGACAGGAAGGGATCAGAGGGGAGCTAGcgggtgggagtagagggagtagtaggTAGATAGAGGTTTCCTCAGATATTAATTCATCAGCCTGATGGTTAAGGTACGGCTTGAGGATTAGATAGAAGTCATGGGTGAGAGGCCAGAGGTGAGCTTGCCTCCAAGTCCTCGTCGCCATAGTTATGGAGCACAGCTTTGATCTCCACGTGTTCGTTCCTCGCTACTGAGTACGGCAGCTTCAGGTCCACGAAGAAACGCTTCCACGCACGCACGTTCCACGGCTCGGCTACGCAGAAACCTGGAATAAAAACAAAATGATTCAAATGAACAAACAGCAGGTGGTTGAGGACTTCATGCTTTAGTTAGAATGATAGAATTGTACAGCAATATGTTGTATTCCTCATATGGCACCAGTATCCTCACTAGCATACTACCTGGACTCCTCCTGGGAAATGACTGAATATGGGTACAGTGAGAGGAAGCCATTTTAGACCACTGACAATTAGGCCCAATCCCAAATAGACCCCTTAAATCCTAAACCCTATGCACATGTGGTGATCTGATTGGACATGACAGGTGTTAGTGATATGGTAACAGTTCCACCTTGCCCTCTGATTGGTGTTTCACCTTGCCAACAAGGGCGTGGCTATGGCTACCATGGCTACCCCAGGGGAAGGGAAGGGTCTACCTGTTACAGGTGAGGAGCTGATGGCTAGTACCCCCCACTGGGTGATAGTGTCTGGGAAGATGGATTCCACATGCAGCGTTGCCAACCTGTAAGGAACAGACCCAAACTAATGAATCCCATTGAGTTGACCTCTTGTAAGCTCAGCTTGTGGCATGAGCACAGTAAAACATTATCTTGAaggtaaatagagagagagactggtggatTGTGATCGATTGATGCCGTTGCCTAATGCAATGCTAACAGTGACACGCACGCGcacaaataaatacacacacacacaaatatcccTGGGACAGTACACGATGGTGCAACAGTgtttatttttgggggggaatgAAAAAAGGCCAGGCTGTTCCTGATCTGTTAACCCAGCCAGTCTCAATGTGACCTCCAGTCCACTGTGGTGCAACTCTGGGGATTTACAGAGTAGGTCGTTTCATTTCAAAGGGATACTGCGAGATTCTGTCAATTTGCCCTTTTCTACTTCTCCAGAGTCtaatgaactcgtggataccatttctgtgtctctatgtgcagtatgaaggaagttctAGGCGGCTAccagagcggcaggtagcctagtggttagagcgttggactagtaaccgaaaggctgctagatcaaatcccagagctgacacaaggcagttaacccactgttcccaccgtggccgtcattgaaaatgagaatttgttcttaactgacttgcctagttaaataaaggtcaaataaaaaaaatactagcTTAATTGCCAGAACCTTGCAGTATCCCTTTAAGGGTGAGAGGAGTGTGGCTTGGCCTATTCCTCTTTCGACTGGGATCACAAAACTGGTCAACCCCTCATAGAAAGAGTTTTCCCTGGACAGGTCATGTGGTTAGGAAAAACCCCTGGCCCTACTCATAGGAAGTAGCCTGTAGTACGCACAGTTCAGCACAGTTTCAAACCAAGTCTTGAGCCTATGAGCAGGGCAACTGCTGTCCCTTTCTATAAAGGGGTGAGAGGacagacacacattcactcaCCCGTCTCTGCTGTCCTCAGGCACACTGGGCAGCGGCAGGTCTTTCCACAGCCATGACTCATAGAACTTAGACCTTACTGTCACCTCACTCTCCTCCATAaagtcatcctcctcttcctcctcctcttcctcagcaAAAGACCCTCTCTGTCCTTCCAGAACAGGTTTGGATTCCATTCTCACTAAAGACTCGCTCAATATTTCTTCACCTGATGCCAAAAAATAAACATGTTAAAACTCTGTTTGATGGATGAGTGGATGAATCGATTGATTGACGGATTAATTGAGCAATCAATCAGTTTGAACTCAGTTCTCTGCTGTAACATACAGGGGCCACTTGGACGGAAGTTAGATCTGGTTAGAATGAAATTAAATTAGACGAGGGGTCCAAGACTAAGACCGGGAGGGGAGCGAGGGGTCCAAGACTAAGACCGGGAGGGGAGCGAGGGGTCCAAGACCGAGACCAGAAAAATGCAAATCCACCATAATAAGAGTTGAAAAagtccagtatttctgtgttcagATTTCAGAAGGACattctttagacattcagaatGGGGATAAATGCTGAGGACAGAAGTTATCACTAATCCAAACAGGTCCATAAGAAGACAAGTTTACCCTAGTGTCCCCTTACTAATAGTTAGCATAAAACTTTCAAGCAATTTCCCACACTAGTTCCTACCAGCAAATCAAGGAAATCCTGCTGAGCACTGAAAAATATCCTCAAACCTTGTAGTGAAAGTAATGGACAGTCATTTTACAAGTAAAGTAGGAACCCCAGGTTTCAATAGGGGATCAGATATTCATGTGTCATGAAAGGAGTGTGGATATTTGGCCTGGCGAAGCTGTTTTACGTGCTGACTGGTGATGTGCAGTTTGCGAACAATTCATTATTTTTGAACAACTCTTTTGACTGACTCGAGAGTCATGATTCATTCATTTTAGTCATTTGTTTGACCTGCTAATGCTGGCAGCAATGAACCCTACAGCAGGGTTAAGACACACTCTTCAGGCTCGGTGGCTCCAGAGAAGAGCTTTGATCTCCAACTAACTGTCTGTCATATGGTGCAGGAAAATAGATCATGAGCATAGAGAAGAAAAATACATGATTACAACTGATAATGAATCACATGGTGCAAGAACAAGTGCAATTAATTGATTATTGAATGTTATGGACGCAGCTTTGTAGAATCAAAACACACAGACTCTGCTCAACAAACTCAATGGTCTCTCGCATCTCGGGGAAAATGTGTCTGTCCAGGGTCAGCCTGAGTAGATCTGTGGTGGTAGGCGGTATGGTGGTGGTATGGGGTAGTCTGGTGTcaaactcctctcccctgtactTGGAGCAGCAGTACCTGAAAGCCTTGATGCATTCCCATCCCTCAGTGATGTAGAGGGAGCGTCGGGTGCAGGAGTAAGGCATGGGGATCTCTCTCAGGCCATCCTTACAACACTGACGCAACAGCTTCTCTCTGTAGTGGTTCtctgtggggaagagagagagctcagaaccatctatctatcaatcaatcaatcgatcCACCTTTCCGTCAATAAATCAGTCCCCCACTCAATCAATGAATCATTCCATACATCAACCAAAAATGAACATAGCACTTTTTCTGTCACTGACCCAGTAGAGTTCTGCGTTGCAACATCTCAGCAGAGCGCCTCCTCCTGGACCTCCCTGGGCACTGCATGCCTGCAGAAGagatggaaggggggggggggggggggggggggggggaacacagaTGTCTATACCACTGGTCTGTTTTACTCAAACTCATGATTGGGCGACTCTGGAATGTTTTGCTTTAACTAATCTTCCCTGCAGGctcacagtaaacaaacacaacattacAAACATGGCCTTTGGATGCCTGCAAAGGCCATGtaaccttgatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccaaaaggcaaaaggccttctGTGGGGGCGGGGATTAAAACTAAAAtgagttaaataaaaatataggacaaaacacatcacgacaagacagacaacacaacactacataaagacagacagcacaacactacataaagagagacctaagacaacactacactacataaagacagagagacctaagacaacactacactacataaagacagacctaagacaacacaacactacataaagacagacaacacaacactacataaagagagacctaagacaacacaacactacataaagacagacctaagacaacacaacactacatacagagagacctaagacaacacaacactacataaagacagacaacacaacactacataaagagaaacctaagacaacactacactacataaagagagacctaagacaacacaacactacataaagacagacaacacaacactacataaagagagacctaagacaacacaacactacataaagagagacctaagacaacacaacactacataaagagagacctaagacaacacaacactatagaAAGACAGACctcagacaacacaacactacataaagagagacctcagacaccacaacactacataaagagagacctaagacaacacaacactacataaagacagacctaagacaacacaacactacataaagacagacctaagacaacacaacactacatacagagagacctaagacaacacaacactacataaagacagacctaagacaacacaacactacatacagagagacctaagtcaacacaacactacatacagagagacctaagacaacacaacactacataaagacagacctaagacaacacaacactacatacagagagacctaagtcaacacaacactacatacagagagacctaagacaacacaacactacataaagacagacctaagacaacacaacactacataaagacagacctaagacaacacaacactacatacagagagacctaagacaacactacataaagacagacctaagacaacacaacatacagagagacctaagtcaacacaacactacatacagagagacctaagacaacacaacactacatacagagagacctaagacaacacaacactacatacagagagacctaagacaacaccacactacataaagagagacctaagacaacacaacactacataaagagagacctaagacaacacaacactacataaagagagacctaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1303999 lncRNA downstream 10583 11127033 ~ 11128124 (-) True G1143398
TU1303989 lncRNA downstream 41777 11096625 ~ 11096930 (-) True G1143388
TU1303988 lncRNA downstream 61498 11076918 ~ 11077209 (-) True G1143387
TU1303986 lncRNA downstream 70791 11067686 ~ 11067916 (-) True G1143385
TU1303985 lncRNA downstream 71584 11066877 ~ 11067123 (-) True G1143384
TU1303979 lncRNA upstream 2332 11149696 ~ 11155854 (-) False G1143378
TU1303971 lncRNA upstream 6433 11153797 ~ 11157192 (-) True G1143378
TU1304016 lncRNA upstream 28116 11175480 ~ 11175783 (-) False G1143410
TU1304017 lncRNA upstream 28116 11175480 ~ 11175783 (-) True G1143410
TU1304024 lncRNA upstream 32924 11180288 ~ 11180969 (-) True G1143414
XM_036942359.1 mRNA downstream 22615 11115135 ~ 11116092 (-) True LOC110485570
XM_036942360.1 mRNA downstream 28077 11107546 ~ 11110630 (-) True LOC118938431
XM_036942357.1 mRNA downstream 37494 10981682 ~ 11101213 (-) True LOC118938429
XM_036942587.1 mRNA downstream 225165 10780341 ~ 10913542 (-) False LOC110494931
XM_036942352.1 mRNA downstream 376340 10740805 ~ 10762367 (-) False LOC110487189
XR_005035707.1 mRNA upstream 85121 11232485 ~ 11233755 (-) False LOC118938432
XM_036942319.1 mRNA upstream 176279 11323643 ~ 11338104 (-) False LOC110485558
XM_036942318.1 mRNA upstream 176279 11323643 ~ 11359141 (-) False LOC110485558
XM_021556653.2 mRNA upstream 278392 11425756 ~ 11429422 (-) False LOC110485554
XM_036942341.1 mRNA upstream 287268 11434632 ~ 11446652 (-) True LOC110485550
TU1302932 other downstream 316340 10820424 ~ 10822367 (-) True LOC110494931
TU1303216 other downstream 572242 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 839340 10295744 ~ 10299367 (-) False G1142620
TU1302900 other downstream 1036189 10097922 ~ 10102518 (-) True lgals2b
TU1302452 other downstream 1156441 9980348 ~ 9982266 (-) True G1142121
TU1303981 other upstream 10522 11157886 ~ 11159261 (-) True G1143380
TU1304064 other upstream 133698 11281062 ~ 11282092 (-) True G1143449
TU1304123 other upstream 280326 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 308210 11455574 ~ 11494340 (-) True LOC118938427
TU1304298 other upstream 653106 11800470 ~ 11811231 (-) False LOC110485539

Expression Profile