RNA id: TU1304064


Basic Information

Item Value
RNA id TU1304064
length 765
RNA type TUCP
GC content 0.45
exon number 2
gene id G1143449
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11281062 ~ 11282092 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaatagcaaaaaatatgcagtgttgtcagaccttGAATAATGCTAAGGAAATAAGTTCCTATTcattttaaacaacacaatactaatgttttaacttgggaagagttcagaaatcaatatttggtggaataaccctgattttcaatcacagctttTATGCGTCTTGGCATGCTCCCCACCAGTCTTTCACTGTCATGTTGGGTGACTTTATGCCACTCCTGGCGCAAAGATCCAAGCAGCTCAGCTTTGTTTGAGggcttgtgaccatccatcttcctcttgatcacattccagaggttttcaatggggttcaggtctggagattgggctggccatgacagggtcttgatctggaggtcctccatccacaccttgattgacctggctgtgtggcatgAAGCATCGTCCTACTGGAAAAAACGAtcctcagagttggggaacattgtcagcgcagaaggaagcaagttttcttccaggacaaccaaatgtcacagtgggtgcgagacctggagaggcctacaagccacagtgtctcgcacccactgtgaaatttggaCCCAAACACAGAGctataaatagtaaaaccagagaaactgatcattttgcagtggtctcttcattttttccagagctgtatGTGTCCAGGGGTTGGGTTCACTTGACGTTGCAGCACAGCAAGATTCTCAGTAGACAGGGGGCATATGGGATGTCAGGAACAGTGACCCCATTGTCAGTGTTTCCAGATTCCAGATGATTCTCCTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304053 lncRNA downstream 19522 11261073 ~ 11261540 (-) True G1143441
TU1304047 lncRNA downstream 33832 11246984 ~ 11247230 (-) True G1143437
TU1304046 lncRNA downstream 34616 11246223 ~ 11246446 (-) True G1143436
TU1304028 lncRNA downstream 48302 11218089 ~ 11232760 (-) True LOC118938432
TU1304035 lncRNA downstream 71073 11209710 ~ 11209989 (-) True G1143425
TU1304068 lncRNA upstream 42136 11324228 ~ 11325698 (-) False LOC110485558
TU1304070 lncRNA upstream 46577 11328669 ~ 11359107 (-) True LOC110485558
TU1304091 lncRNA upstream 48794 11330886 ~ 11331461 (-) True G1143471
TU1304106 lncRNA upstream 106771 11388863 ~ 11389064 (-) True G1143485
TU1304144 lncRNA upstream 191845 11473937 ~ 11474530 (-) True G1143517
XR_005035707.1 mRNA downstream 47307 11232485 ~ 11233755 (-) False LOC118938432
XM_036942359.1 mRNA downstream 164970 11115135 ~ 11116092 (-) True LOC110485570
XM_036942360.1 mRNA downstream 170432 11107546 ~ 11110630 (-) True LOC118938431
XM_036942357.1 mRNA downstream 179849 10981682 ~ 11101213 (-) True LOC118938429
XM_036942587.1 mRNA downstream 367520 10780341 ~ 10913542 (-) False LOC110494931
XM_036942319.1 mRNA upstream 41551 11323643 ~ 11338104 (-) False LOC110485558
XM_036942318.1 mRNA upstream 41551 11323643 ~ 11359141 (-) False LOC110485558
XM_021556653.2 mRNA upstream 143664 11425756 ~ 11429422 (-) False LOC110485554
XM_036942341.1 mRNA upstream 152540 11434632 ~ 11446652 (-) True LOC110485550
XM_036942335.1 mRNA upstream 164929 11447021 ~ 11494371 (-) False LOC118938427
TU1303981 other downstream 121801 11157886 ~ 11159261 (-) True G1143380
TU1302932 other downstream 458695 10820424 ~ 10822367 (-) True LOC110494931
TU1303216 other downstream 714597 10564460 ~ 10566465 (-) True G1142757
TU1303056 other downstream 981695 10295744 ~ 10299367 (-) False G1142620
TU1302900 other downstream 1178544 10097922 ~ 10102518 (-) True lgals2b
TU1304123 other upstream 145598 11427690 ~ 11429365 (-) True LOC110485554
TU1304109 other upstream 173482 11455574 ~ 11494340 (-) True LOC118938427
TU1304298 other upstream 518378 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other upstream 518378 11800470 ~ 11811231 (-) False LOC110485539
TU1304300 other upstream 518378 11800470 ~ 11811231 (-) True LOC110485539

Expression Profile