RNA id: TU1304144



Basic Information


Item Value
RNA id TU1304144
length 237
lncRNA type intronic
GC content 0.58
exon number 3
gene id G1143517
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11473937 ~ 11474530 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ccacccattctccctctcctctcctctcctttcccttcccacccattctccctctcctctcctttcccttcccacccattctccctctcctctcctttcccttcccacccattctccctctccactcctttcccttcccacccattctcccactcctttcccttcccttcccacccattctccctctcctctccactcctttcccttcccacccattctccctctcctctcctctcc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1304106 lncRNA downstream 84873 11388863 ~ 11389064 (-) True G1143485
TU1304070 lncRNA downstream 114830 11328669 ~ 11359107 (-) True LOC110485558
TU1304091 lncRNA downstream 142476 11330886 ~ 11331461 (-) True G1143471
TU1304068 lncRNA downstream 148239 11324228 ~ 11325698 (-) False LOC110485558
TU1304053 lncRNA downstream 212397 11261073 ~ 11261540 (-) True G1143441
TU1304149 lncRNA upstream 5862 11480392 ~ 11486014 (-) True G1143521
TU1304203 lncRNA upstream 91544 11566074 ~ 11572819 (-) True G1143568
TU1304230 lncRNA upstream 141268 11615798 ~ 11617512 (-) True G1143588
TU1304282 lncRNA upstream 232143 11706673 ~ 11712341 (-) True LOC110485537
TU1304306 lncRNA upstream 271932 11746462 ~ 11749253 (-) True G1143643
XM_036942341.1 mRNA downstream 27285 11434632 ~ 11446652 (-) True LOC110485550
XM_021556653.2 mRNA downstream 44515 11425756 ~ 11429422 (-) False LOC110485554
XM_036942318.1 mRNA downstream 114796 11323643 ~ 11359141 (-) False LOC110485558
XM_036942319.1 mRNA downstream 135833 11323643 ~ 11338104 (-) False LOC110485558
XR_005035707.1 mRNA downstream 240182 11232485 ~ 11233755 (-) False LOC118938432
XM_036940206.1 mRNA upstream 232044 11706574 ~ 11712335 (-) False LOC110485537
XM_036940204.1 mRNA upstream 238928 11713458 ~ 11722106 (-) True LOC110485529
XM_036940202.1 mRNA upstream 249196 11723726 ~ 11732445 (-) False LOC110485542
XM_036940203.1 mRNA upstream 249196 11723726 ~ 11732449 (-) True LOC110485542
LOC118938530 mRNA upstream 261834 11736364 ~ 11737076 (-) True LOC118938530
TU1304123 other downstream 44572 11427690 ~ 11429365 (-) True LOC110485554
TU1304064 other downstream 191845 11281062 ~ 11282092 (-) True G1143449
TU1303981 other downstream 314676 11157886 ~ 11159261 (-) True G1143380
TU1302932 other downstream 651570 10820424 ~ 10822367 (-) True LOC110494931
TU1303216 other downstream 907472 10564460 ~ 10566465 (-) True G1142757
TU1304298 other upstream 325940 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other upstream 325940 11800470 ~ 11811231 (-) False LOC110485539
TU1304300 other upstream 325940 11800470 ~ 11811231 (-) True LOC110485539
TU1304416 other upstream 477065 11951595 ~ 11952568 (-) True G1143743
TU1304446 other upstream 568578 12043108 ~ 12081882 (-) True G1143771

Expression Profile