RNA id: TU1304317


Basic Information

Item Value
RNA id TU1304317
length 2386
lncRNA type antisense_over
GC content 0.41
exon number 4
gene id G1143652
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 11759602 ~ 11762332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atttatttactaaatacctaactaatcacacagaattcatatacacacaattaatcataacttgattacaaattacgtcataaaggaaaacgtccctagagggcggaacagatatgacagcttgttacacaaaggaaaagggctgggtttgagcaAAAGAGCgggagactgaggaacaaaggaaaaagctgtgctatcgtaaatacagtatcttatgcattctaaattaaacacccatttggaaaaggaaaatgcaataaatatttactgtgcgctgcgcttcagtaggttggtggtagatggaagaccgtgttgccaaaccgagtcctttgtcctttgaagaatgtctctggtggtcaattggatacgttgtagtaacgtcattgtgtggtagatgggatactctgtctgttccttcctaaccctcgtttgcagtagctgttgctaactcaacggctaggaggtaccacttctgtagtgaataagagttcaaagttcataccattctcatccaaagctcacgctgatgttggcttcattccgtagttattatctgaaccattctgacattggaccgtcgtcctcacatcatcggaacaggaggttatattgtcgtcaaggctttatataggaagggagaaaagtggtgtgtttcatagtttacaacctctgtctcttcacgtgggcgggccactgagtgagcagccctaatttatgaaaacccacatctcacattttagaagctaaaatcacatttcatcccgtcacaaataatttcatattcaaacatttaaattgaacaacaattccatgtgaatccgataactctgatatgtagactttccactgtagaggttatgtcatcttatcattgagaatgtctcagatgacaactgaaccgacatcatattcattaagtaccactgcatatgttcaattgttcggattaccagaatatagttcattttccccgacctactgatgttcccagaatctctatgttaaccaagggttttgtaaatgtaacctcagtagggtagagagaggaaaaaggggagaagaggtatttatgactgtcataaacctacccccaagGTCAACGTCAcgacaccatactgtagatcagaTCAAGGAACCAAGACACAACACTGCCGCCACAGCTCCACAATGAATGATACAGCGTGTCTCACTTTTCAGGAAGTAAAAGAGCGTATTACAAGGAGCCGGCTCTTTTGTGCTGAAAAACGACAACACTGTGCtctgtatctactgtctctgtagaGATCATAGACCAGTAAGTCCATGGAGGTGGGGGTCATGAATCGGGACACAACCTACATGTCAGGTGCAATTCTTGACAGATGTGTACATTTTTAACAAGTGTAACTGCTGTAACTATTGTTGTGACTACTACTGTCATAGAGAAAGGGCACAGCCCTCTAATGACTGCTATTATCTTCATATTTTTTTCttgtacatttttgtattttatttttgtagtgCCTTTTGTTTTATTTTCCAGTTTCTGTTCCTTCTGTATTGATATCATATGTTCTTCCTTCGTTCTATCTACAATAGACTTACAGCAGGAAATTATGATAAGAGTGATGATTGTTGCAACAATGATTATCAGCTGAAACTTAATATCTGATTTTTCAGAAGCCTTCAATGCCAGATTTTTTAGCTCCTTgcgcttcttctcctcctcctctctgatctctcttTCCGCTGCTTCCCTCTttttctcctcctcctctctgatctctctttctgctgcttccctctttttctcctcctctttcCTAACCCTTTCCTGTATCAGCAAGTCTGCCACATGATGATAACCCCTATACTCATTCAGTAATTCATCTATCTTCTCTAACAGCTCTGAGACCTGAGTGTTGTCATTCTTGTCCTTGTTGTTAAAGACATGGTATCTGTCCCCACAACTGTTAATGACTTGTTGTAGATGGCTGCTGGCCTTTATAAACGTCTCTACCGATTTCCCCTCTAGCTGGTCTACCCCAGTAAACAGAACGATCGTGTACTTTAAAGCCTCCTCTCCAAAATTCTCCTGGATCCATTGAACTGACTTTCTGTCCTCATCTGTGAATTCCTCCAGCCTGATCACCAATAGGAAGATATGAGGTGTGGTGTTAATGCACTCAGCAGTTTTAACCATAACTTCCTCAGGTTGCAACAATGTGCCTAAGATACCTGGAGTGTCAATCACAGTTATTATATTCTGACCAATAACAACATTGTGTTTCTCACACTGTGTGGTCACAGACACTGGAGAAGCCTCTGCTCGAAACGCCTCTCTCCCCAGGATGGTGTTTCCTGTTGAACTCTTCCCTGATCCAGTCTTACCCAGCAGAACAATCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1304306 lncRNA downstream 10349 11746462 ~ 11749253 (-) True G1143643
TU1304282 lncRNA downstream 47261 11706673 ~ 11712341 (-) True LOC110485537
TU1304230 lncRNA downstream 142090 11615798 ~ 11617512 (-) True G1143588
TU1304203 lncRNA downstream 186783 11566074 ~ 11572819 (-) True G1143568
TU1304149 lncRNA downstream 273588 11480392 ~ 11486014 (-) True G1143521
TU1304324 lncRNA upstream 10715 11773047 ~ 11773540 (-) False G1143657
TU1304326 lncRNA upstream 10715 11773047 ~ 11773540 (-) True G1143657
TU1304351 lncRNA upstream 69413 11831745 ~ 11832405 (-) True G1143682
TU1304357 lncRNA upstream 75060 11837392 ~ 11838515 (-) True G1143688
TU1304402 lncRNA upstream 170750 11933082 ~ 11933581 (-) True G1143729
LOC118938530 mRNA downstream 22526 11736364 ~ 11737076 (-) True LOC118938530
XM_036940203.1 mRNA downstream 27153 11723726 ~ 11732449 (-) True LOC110485542
XM_036940202.1 mRNA downstream 27157 11723726 ~ 11732445 (-) False LOC110485542
XM_036940204.1 mRNA downstream 37496 11713458 ~ 11722106 (-) True LOC110485529
XM_036940206.1 mRNA downstream 47267 11706574 ~ 11712335 (-) False LOC110485537
XM_036940207.1 mRNA upstream 35570 11797902 ~ 11811263 (-) False LOC110485539
XM_036940208.1 mRNA upstream 111649 11873981 ~ 11875822 (-) True LOC110485534
XM_036940209.1 mRNA upstream 129841 11892173 ~ 11905736 (-) False LOC110487235
XM_036940210.1 mRNA upstream 129841 11892173 ~ 11905783 (-) True LOC110487235
XM_036940211.1 mRNA upstream 144570 11906902 ~ 11928561 (-) False LOC110485617
TU1304109 other downstream 265262 11455574 ~ 11494340 (-) True LOC118938427
TU1304123 other downstream 330237 11427690 ~ 11429365 (-) True LOC110485554
TU1304064 other downstream 477510 11281062 ~ 11282092 (-) True G1143449
TU1303981 other downstream 600341 11157886 ~ 11159261 (-) True G1143380
TU1302932 other downstream 937235 10820424 ~ 10822367 (-) True LOC110494931
TU1304298 other upstream 38138 11800470 ~ 11811231 (-) False LOC110485539
TU1304299 other upstream 38138 11800470 ~ 11811231 (-) False LOC110485539
TU1304300 other upstream 38138 11800470 ~ 11811231 (-) True LOC110485539
TU1304416 other upstream 189263 11951595 ~ 11952568 (-) True G1143743
TU1304446 other upstream 280776 12043108 ~ 12081882 (-) True G1143771

Expression Profile