RNA id: TCONS_00005891


Basic Information

Item Value
RNA id TCONS_00005891
length 832
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id XLOC_002117
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 22960289 ~ 22965426 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CATCATTTCTACAGATGTTCTTTCTACCTTTTTTTTACAGGTATGAAAGTAAAGGTGTGTAAATCTCATTCAAATGTTAGTCTCTCAACAATCAATCTGCTTGTTCAGACGGAGCTTCCAAAAGCTCCCACTGTGTGGCGTCAATGAGCCTATAGTTAAGGAGTCTGTATTTCTGCGGGTCTTTCTGCCTCTGTCTGCGTACCTCCTCATACAGACTCTCAAGCACAGCCAGAGGAGGTGTGAATTGGCCCATCTTGGCCAGATCTAGGTAATAACCCCACTGATCCCTGTCCAAATTGAGCAGGTGCTTCATCTGCACAcctttgtcttgttttctttGCATCTCTCCATGTACCTCCATCTCCATCTCTTCCTGGGTGGGCAGTTTTATCAAGCCCTCCAGAACAGCAAGAGCAAATTTAACCTGTGGATAAAAACGAAATGTGCAACAGTGAGAACGAATCACACTAAGTTTTCAATCTGTATTAAGTTCTCTGCTCACCTGACAGTCAAAATGTatgaaggggcaaataattttgcaaataccaataaaaaaaatGGAAGGAAAGCTAGGGGGCAGCAGGTATTTATATAGAGGAGCCACTAAAAGGTCTTGTATGTCCAGGGCAAGCTCTGATGGAGAGAGGAAAGGGAAGTTAAAGTTGTATCCTGTACAGAAGAGAAGAATATCTGCCCGGGTCACTGATCCATCCTGGAACTGTAAAGAGCCATCCTCCAAAACACCAACAACAGCGCTGGCCTGCCGGATGCCCAAAGGTGGAGAAATGCCACATGAATGCAGAGCATAATACCTATTCACATCACCTCAGCG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004111 lncRNA upstream 3919 22938231 ~ 22956370 (+) False XLOC_002116
TCONS_00005890 lncRNA upstream 4452 22942413 ~ 22955837 (+) True XLOC_002116
TCONS_00005888 lncRNA upstream 121808 22834311 ~ 22838481 (+) False XLOC_002110
TCONS_00005889 lncRNA upstream 121808 22834414 ~ 22838481 (+) True XLOC_002110
TCONS_00005887 lncRNA upstream 338998 22620330 ~ 22621291 (+) True XLOC_002106
TCONS_00004113 lncRNA downstream 68903 23034329 ~ 23039290 (+) True XLOC_002119
TCONS_00005892 lncRNA downstream 175870 23141296 ~ 23215879 (+) True XLOC_002121
TCONS_00005708 lncRNA downstream 577191 23542617 ~ 23544066 (+) True XLOC_002128
TCONS_00005893 lncRNA downstream 623249 23588675 ~ 23591058 (+) True XLOC_002131
TCONS_00005894 lncRNA downstream 1017881 23983307 ~ 23992917 (+) False XLOC_002132
TCONS_00004110 mRNA upstream 34250 22918384 ~ 22926039 (+) True XLOC_002115
TCONS_00004109 mRNA upstream 40685 22918338 ~ 22919604 (+) False XLOC_002115
TCONS_00004108 mRNA upstream 44193 22912251 ~ 22916096 (+) True XLOC_002114
TCONS_00004106 mRNA upstream 52871 22891126 ~ 22907418 (+) False XLOC_002113
TCONS_00004105 mRNA upstream 53521 22890791 ~ 22906768 (+) False XLOC_002113
TCONS_00004112 mRNA downstream 56837 23022263 ~ 23026529 (+) True XLOC_002118
TCONS_00004114 mRNA downstream 94965 23060391 ~ 23069323 (+) True XLOC_002120
TCONS_00004115 mRNA downstream 133939 23099365 ~ 23143104 (+) False XLOC_002121
TCONS_00004116 mRNA downstream 134464 23099890 ~ 23138860 (+) False XLOC_002121
TCONS_00004118 mRNA downstream 476062 23441488 ~ 23443074 (+) True XLOC_002123
TCONS_00004107 other upstream 53369 22891183 ~ 22906920 (+) True XLOC_002113
TCONS_00004103 other upstream 112885 22847272 ~ 22847404 (+) True XLOC_002111
TCONS_00004086 other upstream 924042 22035161 ~ 22036247 (+) False XLOC_002097
TCONS_00004078 other upstream 979624 21980547 ~ 21980665 (+) True XLOC_002095
TCONS_00004071 other upstream 1147711 21804772 ~ 21812578 (+) False XLOC_002083
TCONS_00004117 other downstream 452407 23417833 ~ 23417947 (+) True XLOC_002122
TCONS_00004125 other downstream 1026955 23992381 ~ 23992699 (+) True XLOC_002132
TCONS_00004130 other downstream 1388324 24353750 ~ 24353866 (+) True XLOC_002137
TCONS_00004134 other downstream 1456805 24422231 ~ 24442358 (+) False XLOC_002140
TCONS_00004135 other downstream 1461503 24426929 ~ 24435439 (+) False XLOC_002140

Expression Profile

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