RNA id: TCONS_00042660


Basic Information

Item Value
RNA id TCONS_00042660
length 2312
RNA type mRNA
GC content 0.47
exon number 13
gene id XLOC_021457
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 6077503 ~ 6126003 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAATTATTCCAGTGTTGATAAGAGCAGATTCATCAATCTGAGGGCTATTTAAAGCAGAGGAGGAGTCCCCCACACTCTCACGGGCGCTATAAATTCAACTGATGTTTCAAAGCGCAGCAACCCTGTTGAGTTTTCCCCAAGCATCATGCCAGCCAAACCAGCACCCATCAAAAAGTCAGCCAAGAAGGCTGCTGAGAAAGAGGAAAAGCCCGCAGCGCCGGCGCCCGTGCCCGAGACCGCTCCGGTGGAGGCGCCTCCTGCTGAAGATCCGCCGGTAGAAGCTGCAGCTCCAGCGGCCGTGGAGGAAACTACACCCGCTCCAGAGGCACCTGTTGCTGAAGCTGCTCCTGCTGAACCTGCACCTGTAGAAGAGCCACCAAAAGCACCTACACCACCTCCTCCAGCAGTTCCCCCTAGTGCCCCTCAAGGCCTCAGTGTGGACGATGTCAACGATACCTCAGTCACTCTGAAGTGGAGATCCCCAGAGAACATTGGCTCTGGGCTGGATGGATACGCCGTGGAATACTGCAAGGAAGGATCTTCTGAATGGGTGGTTGCCAATACCGAGCTTGTCACTTCCAACCGGCATGCCATCAGAGGACTGACAACTGGGGACATGCTTAACATCCGTGTGGTGGCTGTGAATGCTGGAGGCCGCAGTGAGCCTGTTGTCCTGCCTCAGCCCATACCAGTCCGAGAGGTCATGGATCGGCCCAGGATCCGCATGCCCCGTGCCCTGAGGTCCAAATACATCAGGCATGCTGGAGAACAGATCAATCTTGTCATCCCGTTCAGTGGCAAACCTAAACCTGTCATATCATGGACCAAGAATGGCCAGCCTTTGGATACGAAGAAGGTGAATGTCCGAAACAGCGACAAGGATAGCATTCTGTTTATCCGCAAGGCTGAGAGAGATGATTCAGGCAGCTATGAGATGAGTGTAAAGGTCGACAGCTTCGAGGACAAGACTACCCTCATAATTCAGATTGTCGATCTGCCCGGTCCTCCAGTCTCGGTCAAGCTCGTGGACTCTTGGGGCTTCAATGCAGCTCTGGAATGGACTCCACCTAAAGACAACGGCAATACTGAGATCACAGGATACACCGTTCAGAAGGCTGACAAGAAAACTggaGAGTGGTTCACGGTTCTGGAGCACTTCCACAGGCTTAACGTTACTGTCACTGACCTTGTGATGGGAAATGTATACACCTTCAGGGTTTTTTCTGAAAACATGGTCGGAAGGAGTGAGACTGCCGCTGTTACAAAGGATGCTGCTCGTATTAAGAAAACAGGTATTGTCTACAAGCCACTTGAGTACAAGGAACATGATTTCAGCGAGGCTCCCAAGTTCACAGCCCCCCTCAAAGACAGAGCTGCCACTGTGGGCTACACCGCCAAACTACTGTGTGCAGTCCGAGGCAGTCCAAAGCCCAAGATCGAGTGGCTGAAGAACCAGATGCTCCTAGGAGATGATCCCAAATTCAGGCAGATCAACAACCAAGGAGTGTGCTCTCTCGAAATCCGCAAACCATCCAGCTTTGACGGCGGCGTCTACACTTGCAGGGCCAAGAATGCTCTCGGAGAGGCTACAGTTGCCTGTAAGCTGGAGGTCAAACAGGTGACAATCCAAGAGGAAAAAGACAAGAAATAAGTGGATGTGCACAGTTCTCTTGTTAAGGAGCAGCAGGACACgatgtgaaataaaactaaacaaagATGTTTACAGTCGTGCTGGAGGATGAGCTGTTGTGTGCACAATAACACAGTCTCAGCATTCTCAACAAAGACTCAACAAAACACATGAAACAAAGGATAGTTTTCTGTTTTTCTAGAAAAGCTACAGCGCCATGTTAGTTATGGCCTAAAAatagaatttttagttttgtattCCTTGCATGTATTAGTTGTCTGTTCCTGTTTCTTACTGATGAAATCTTTCACTGTCCTTGAGAATACAGTAAGCACACTGTTCTTGCAAcaatataaaatgtacaaaattagcATACTGTGCTTTTCATGTTTTAATTAGATATATTTtgcagtaaacaaaaacaaaaatagtcttattttatgtgaaattgtatgtaaaatcatatttaaaatgtgcttttaaacagGCCTTTGTGTTAAACAGATATTGTAGGCACTGGTCTGTTTGTAATAAACCAGCAAGATGGTTGAACTAATAGTCATGAAGGGTATATTTAAGTAGATGACATGTGGTCTTCACAGCCCATGTACAGGTTTTAAATAGATTTGTAAACAGCCTTTAACTGACGCCCTCACCAAATAAACCTCAGATAAAACCTG

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1531 Is expressed in hypaxial myotome region; musculature system; myotome; pectoral fin; and somite. Orthologous to several human genes including MYBPH (myosin binding protein H).

Ensembl:

ensembl_id ENSDART00000081714

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042657 lncRNA upstream 155039 5906165 ~ 5922464 (+) True XLOC_021455
TCONS_00042656 lncRNA upstream 169524 5871506 ~ 5907979 (+) False XLOC_021455
TCONS_00042652 lncRNA upstream 453834 5595941 ~ 5623669 (+) True XLOC_021452
TCONS_00042651 lncRNA upstream 453860 5595648 ~ 5623643 (+) False XLOC_021452
TCONS_00044775 lncRNA upstream 588160 5471000 ~ 5489343 (+) False XLOC_021449
TCONS_00044776 lncRNA downstream 202343 6328346 ~ 6341688 (+) True XLOC_021460
TCONS_00042671 lncRNA downstream 509082 6635085 ~ 6661864 (+) False XLOC_021463
TCONS_00042670 lncRNA downstream 509169 6635172 ~ 6652147 (+) True XLOC_021463
TCONS_00044777 lncRNA downstream 725928 6851931 ~ 6865956 (+) True XLOC_021467
TCONS_00044656 lncRNA downstream 1078536 7204539 ~ 7206195 (+) False XLOC_021469
TCONS_00042659 mRNA upstream 10467 5977965 ~ 6067036 (+) False XLOC_021456
TCONS_00042658 mRNA upstream 10467 5977965 ~ 6067036 (+) True XLOC_021456
TCONS_00042654 mRNA upstream 334359 5736226 ~ 5743144 (+) False XLOC_021454
TCONS_00042655 mRNA upstream 334361 5736240 ~ 5743142 (+) True XLOC_021454
TCONS_00042653 mRNA upstream 437828 5631381 ~ 5639675 (+) True XLOC_021453
TCONS_00042663 mRNA downstream 15538 6141541 ~ 6156179 (+) True XLOC_021458
TCONS_00042664 mRNA downstream 106892 6232895 ~ 6313808 (+) False XLOC_021459
TCONS_00042665 mRNA downstream 146635 6272638 ~ 6313351 (+) False XLOC_021459
TCONS_00042667 mRNA downstream 418450 6544453 ~ 6574123 (+) True XLOC_021461
TCONS_00042668 mRNA downstream 460464 6586467 ~ 6632106 (+) False XLOC_021462
TCONS_00042596 other upstream 2342494 3721041 ~ 3735009 (+) False XLOC_021425
TCONS_00042520 other upstream 5635151 442237 ~ 442352 (+) True XLOC_021384
TCONS_00042519 other upstream 5664844 412542 ~ 412659 (+) True XLOC_021383
TCONS_00042509 other upstream 5764184 309063 ~ 313319 (+) False XLOC_021378
TCONS_00042508 other upstream 5828403 240604 ~ 249100 (+) True XLOC_021377
TCONS_00042666 other downstream 151172 6277175 ~ 6304274 (+) True XLOC_021459
TCONS_00042675 other downstream 699685 6825688 ~ 6825802 (+) True XLOC_021466
TCONS_00042706 other downstream 3181571 9307574 ~ 9308561 (+) True XLOC_021488
TCONS_00042716 other downstream 3492210 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042717 other downstream 3601407 9727410 ~ 9727432 (+) True XLOC_021494

Expression Profile

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