RNA id: TU1321259


Basic Information

Item Value
RNA id TU1321259
length 1168
lncRNA type read_through
GC content 0.43
exon number 2
gene id G1158542
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26049798 ~ 26064387 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atagccctattgggttaaagacgaagtccatattatgtcaagaacagctcaaataagcaaagagaagcaactgtccatcattactttaaggaccaccacaataatggaagacccagagttacttctgatgcataagttcattagagttaccagccttagaaattgcagcccaaataaatgctttagaagttcaagcaacagacacatctcaacatcatcggttcagaggagactgcgtgaatcaggccatcatggtcaaattgctgcaaggaaaccactactaaagcacaccaataagaagaagacttgcttgggccaagaaacacgagcaatggacattagaccggtggatatctgtccttgggtctgatgagtccaagtttgagatttttggatccgagtgtcatgtctttgtgagacgaggagtagatgaacagattatctctgcatgtgtggttcccaccgtgaagcatggaggaggagatgtgatggggtgcgggtgctttgctattgacaatgtcagtgatttattcattcaagtcacacttaaccagcatgactaccacagcattctgcagcgatatgccatcccatctggtttgggcttagtcccactgtcatttgtttttcaacaggacaatgacccaacacacctccaggctgtgtaagagctatttgaccaagatggagtgctgcatcagatgacctggcctcgacCTCACCCAAATCGAGATGATTTGGGAttagttggatcgcagagtgaaggaaaagcagcctacaagttctcagcatatatgggaactcctacaagactgttggaaaaggattccaggtgaagctggttgagagaaagcaagggtggcaacttttgaagaataaaatatatattttattttaacacttgtggttactacatgattccatgtgttttttaataATTTTGTTGTCTTCTCCATTATtttactatgtagaaaatagtaaaaataaagaaaaacccttgaatgagtaggtgagtccaaacttttgactggtactgtacattcaattccctggcaacagctccagtggacattcctgcagtcagcatgccaattgcccgctccctcagagatctgtggcattgttgtgtgaccaaactgcacattttcgagtagccttttattacccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321127 lncRNA upstream 78844 25848644 ~ 25970954 (+) False G1158422
TU1321128 lncRNA upstream 78844 25966864 ~ 25970954 (+) True G1158422
TU1321200 lncRNA upstream 99768 25949011 ~ 25950030 (+) True G1158491
TU1321020 lncRNA upstream 177066 25813029 ~ 25872732 (+) False LOC110516920
TU1321130 lncRNA upstream 201640 25845630 ~ 25848158 (+) True LOC110516919
TU1321256 lncRNA downstream 7874 26072261 ~ 26085129 (+) True G1158539
TU1321254 lncRNA downstream 24734 26089121 ~ 26095515 (+) True LOC110487386
TU1321281 lncRNA downstream 64396 26128783 ~ 26139138 (+) True G1158562
TU1321360 lncRNA downstream 156695 26221082 ~ 26227325 (+) True G1158640
TU1321370 lncRNA downstream 172679 26237066 ~ 26237505 (+) True G1158650
XR_005035721.1 mRNA upstream 1740 26044982 ~ 26048058 (+) True LOC118938446
XR_005035727.1 mRNA upstream 79269 25966607 ~ 25970529 (+) True LOC110487413
XM_036942386.1 mRNA upstream 177026 25856336 ~ 25872772 (+) False LOC110516920
XR_002472478.2 mRNA upstream 200132 25845283 ~ 25849666 (+) False LOC110516919
XM_036939724.1 mRNA upstream 236878 25811878 ~ 25812920 (+) False LOC118938061
XM_036942403.1 mRNA downstream 23544 26087931 ~ 26095676 (+) False LOC110487386
XM_036942404.1 mRNA downstream 23544 26087931 ~ 26095676 (+) False LOC110487386
XM_036942389.1 mRNA downstream 77154 26141541 ~ 26155230 (+) False LOC110487402
XM_036942388.1 mRNA downstream 81394 26145781 ~ 26155230 (+) False LOC110487402
XM_036942387.1 mRNA downstream 81434 26145821 ~ 26155230 (+) True LOC110487402
TU1321019 other upstream 178395 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 575820 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 586340 25462927 ~ 25463458 (+) True G1157952
TU1320347 other upstream 634817 25413109 ~ 25414981 (+) True LOC110486053
TU1319792 other upstream 944660 25101540 ~ 25105138 (+) True G1157292
TU1321282 other downstream 46109 26110496 ~ 26115864 (+) True G1158563
TU1321331 other downstream 99412 26163799 ~ 26217394 (+) True G1158612
TU1321055 other downstream 1044738 27109125 ~ 27169794 (+) False LOC110487383
TU1321965 other downstream 1225850 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 1428767 27493154 ~ 27768641 (+) True G1158342

Expression Profile