RNA id: TU1321282


Basic Information

Item Value
RNA id TU1321282
length 586
RNA type TUCP
GC content 0.47
exon number 2
gene id G1158563
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26110496 ~ 26115864 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATGAGGCCTGctggatggaggaagaggaggatatcaCAGTCAAAcaagaagtagagggtgaggctgttactgtgaaagaagaggaagacgctttcagagtgaaagaggaggaggatgttacagtaaaaggaGAGGAAGATGCAGTTTATGGCGAGGAGCAGGAGGAGATGACTGTTACATcgaaaaaggaggaggaagaagaggaggaaactggATATCTGGGCCTGGTTTCCCAAACGCATCTTAAGGCATCCAATGGTTCTGACGGTGAACTTAGCCATAAGTccctgattaacactagagagagacgtgacTATTGTGTATCCTCTGGGGAtcctcaacaacctcatgatgctgaagaggcagagaagagtctctccagatcaaaACACCTCAAGAAAAACCTGCAGAGATCCACAGGGAAGGGAACTcacttctgctctgactgtgggaagagattcacctcatcaggcattaaaattcatcagagaacacacacaggagagaaacattatagctgtggtcaatgtgggaggagttttactATATCTGGCCAGctgactcaacaccagagaacacacagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321254 lncRNA upstream 14981 26089121 ~ 26095515 (+) True LOC110487386
TU1321256 lncRNA upstream 25367 26072261 ~ 26085129 (+) True G1158539
TU1321245 lncRNA upstream 45339 26058723 ~ 26065157 (+) True LOC110487393
TU1321259 lncRNA upstream 46109 26049798 ~ 26064387 (+) True G1158542
TU1321127 lncRNA upstream 139542 25848644 ~ 25970954 (+) False G1158422
TU1321281 lncRNA downstream 12919 26128783 ~ 26139138 (+) True G1158562
TU1321360 lncRNA downstream 105218 26221082 ~ 26227325 (+) True G1158640
TU1321370 lncRNA downstream 121202 26237066 ~ 26237505 (+) True G1158650
TU1321079 lncRNA downstream 141961 26257825 ~ 26671072 (+) True G1158376
TU1321051 lncRNA downstream 149112 26264976 ~ 26807861 (+) True G1158349
XM_036942403.1 mRNA upstream 14820 26087931 ~ 26095676 (+) False LOC110487386
XM_036942404.1 mRNA upstream 14820 26087931 ~ 26095676 (+) False LOC110487386
XM_036942401.1 mRNA upstream 29578 26058164 ~ 26080918 (+) True LOC110487373
XM_036942415.1 mRNA upstream 44162 26058706 ~ 26066334 (+) False LOC110487393
XR_005035721.1 mRNA upstream 62438 26044982 ~ 26048058 (+) True LOC118938446
XM_036942389.1 mRNA downstream 25677 26141541 ~ 26155230 (+) False LOC110487402
XM_036942388.1 mRNA downstream 29917 26145781 ~ 26155230 (+) False LOC110487402
XM_036942387.1 mRNA downstream 29957 26145821 ~ 26155230 (+) True LOC110487402
XR_005035734.1 mRNA downstream 137962 26253826 ~ 26255885 (+) True LOC118938455
XR_005035728.1 mRNA downstream 187538 26303402 ~ 26314343 (+) True LOC110487414
TU1321019 other upstream 239093 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 636518 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 647038 25462927 ~ 25463458 (+) True G1157952
TU1320347 other upstream 695515 25413109 ~ 25414981 (+) True LOC110486053
TU1319792 other upstream 1005358 25101540 ~ 25105138 (+) True G1157292
TU1321331 other downstream 47935 26163799 ~ 26217394 (+) True G1158612
TU1321055 other downstream 993261 27109125 ~ 27169794 (+) False LOC110487383
TU1321965 other downstream 1174373 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 1377290 27493154 ~ 27768641 (+) True G1158342
TU1322228 other downstream 1660255 27776119 ~ 27781975 (+) False LOC110485129

Expression Profile