RNA id: TU1321079


Basic Information

Item Value
RNA id TU1321079
length 1173
lncRNA type read_through
GC content 0.40
exon number 2
gene id G1158376
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26257825 ~ 26671072 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggtcaatacaacgcACACATATAAAGTGAATCAATTGAGTCTCTACGATAATGATGGTGGGTCAACAAATCACCCCcagatgattcgttgagagccacgacacaaaagtacaaaggtattttatagccaagatacaacCTACATGACCAACAATAGACACGTAGAAAGTGTCACAAGGTTAAgctttgtatgaaagatactctCTGCTGAGAATTATAAGTATCTGATGTAAAAACACTACTTtttgtgtagagaccagggtctggccctggggtcatctctccctggtaccatatagaacagaaacattaactcatgctctggaatgcggtcTCTTTAGGTTATCGCCCAAAAGACattgtaaatctcctgtcagtgttatctcccagaggcccatcctcagtagaacacacaggcACAATAGTTCTAAGAaccctctattctgttgcataaaacaaccatttaatgcaataaaagtattataacaATCTTGCAGTTTTGCTctgtgtccactgaaagttgactagtaacaacaactgggacataCAAGACACCTATcatgagacccactaaatctgcccaagaagaggaaaacaaaagaaaaacccacaacaaACTTACAGACAGGAAGTAAACCAAAAAAGTGGAGCAACTAAAtgtgttgactctccacatctatcaagacaactggagcactgggccagacactcttaaatagaacctggaccacctcaggtgaaacaccttcccactaacaagatggacaagccagcacaggtgtaacacatactgactaacgaggtgacaccaatctgTGCGCCCAACGTGCTAACGAGTTAGacgtgctaaagtccaacctcaaaacataaatggaaaaaccaaagcctgcAACACCTTCCCCCGTAAGACaacaaatatatcctatatttttgttgaacaagtttgctcaccaccaacagaaaacaacttgctaaaaacaagaaaaaaaacatactttttcattttttagaatcctaaaactcactagcttctagaactctcgtcccaTTGGAACAAGCCCAAACAAAACTAATCTCTAATAGGGAAGCAAATATGTGGAAatgaaatatgaggtgatttgaGTCATGCTTCTTTTAGTAGTGGAATAATGACAATTAGCACTTGAATGTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321370 lncRNA upstream 20320 26237066 ~ 26237505 (+) True G1158650
TU1321360 lncRNA upstream 30500 26221082 ~ 26227325 (+) True G1158640
TU1321281 lncRNA upstream 118687 26128783 ~ 26139138 (+) True G1158562
TU1321254 lncRNA upstream 162310 26089121 ~ 26095515 (+) True LOC110487386
TU1321256 lncRNA upstream 172696 26072261 ~ 26085129 (+) True G1158539
TU1321653 lncRNA downstream 23172 26694244 ~ 26695407 (+) True G1158909
TU1321028 lncRNA downstream 32948 26704020 ~ 26753678 (+) False LOC110487360
TU1321026 lncRNA downstream 53812 26724884 ~ 26728565 (+) True LOC110487360
TU1321691 lncRNA downstream 118071 26789143 ~ 26789958 (+) True G1158946
TU1321103 lncRNA downstream 127815 26798887 ~ 26897170 (+) True G1158400
XR_005035734.1 mRNA upstream 1940 26253826 ~ 26255885 (+) True LOC118938455
XM_036942389.1 mRNA upstream 102595 26141541 ~ 26155230 (+) False LOC110487402
XM_036942388.1 mRNA upstream 102595 26145781 ~ 26155230 (+) False LOC110487402
XM_036942387.1 mRNA upstream 102595 26145821 ~ 26155230 (+) True LOC110487402
XM_036942403.1 mRNA upstream 162149 26087931 ~ 26095676 (+) False LOC110487386
XM_036942381.1 mRNA downstream 4167 26675239 ~ 26690594 (+) True LOC110487400
XR_005035715.1 mRNA downstream 53767 26724839 ~ 26752707 (+) False LOC110487360
XM_036942399.1 mRNA downstream 67996 26739068 ~ 26752707 (+) False LOC110487360
XM_036939727.1 mRNA downstream 142494 26813566 ~ 26817535 (+) True LOC118938063
XM_036939728.1 mRNA downstream 177618 26848690 ~ 26872255 (+) True LOC118938064
TU1321331 other upstream 40431 26163799 ~ 26217394 (+) True G1158612
TU1321282 other upstream 141961 26110496 ~ 26115864 (+) True G1158563
TU1321019 other upstream 386422 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 783847 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 794367 25462927 ~ 25463458 (+) True G1157952
TU1321055 other downstream 438053 27109125 ~ 27169794 (+) False LOC110487383
TU1321965 other downstream 619165 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 822082 27493154 ~ 27768641 (+) True G1158342
TU1322228 other downstream 1105047 27776119 ~ 27781975 (+) False LOC110485129
TU1322229 other downstream 1105500 27776572 ~ 27782350 (+) False LOC110485129

Expression Profile