RNA id: TU1321114


Basic Information

Item Value
RNA id TU1321114
length 420
lncRNA type read_through
GC content 0.35
exon number 2
gene id G1158411
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26316447 ~ 26542441 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atatagtatattctagaattacCAGTGTAGATTTCCTGTGGGGTTCAAATTGTTagagctgttgataagtcattgtataATATTCAGCCAATTAATTTTCATGCCATTATATCAATAACGCCCAaccagaagagagagaaactctTCCTGAACCACCTTCTCCTGCTGGCCTTCGTAAATTCTGGCGTTGCTGGTAATAGgctacacaaGCAGTCGGCAACCTACATTTGGAGTGCAAATTTATCtgaccatttctactgatctggtgccagttatgattttcatatgttCATTTTactggaacagtttcatttaattgATAATAGTATCTCGAAATCATTGTCTGTGATTCATCTACATTCTAAGTGAAAATTATACAAATTTAAAAGTAACTTTAATAACCAtctacataaagccaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321370 lncRNA upstream 78942 26237066 ~ 26237505 (+) True G1158650
TU1321360 lncRNA upstream 89122 26221082 ~ 26227325 (+) True G1158640
TU1321281 lncRNA upstream 177309 26128783 ~ 26139138 (+) True G1158562
TU1321254 lncRNA upstream 220932 26089121 ~ 26095515 (+) True LOC110487386
TU1321256 lncRNA upstream 231318 26072261 ~ 26085129 (+) True G1158539
TU1321460 lncRNA downstream 11486 26553927 ~ 26554885 (+) True LOC110487357
TU1321566 lncRNA downstream 27255 26569696 ~ 26570103 (+) True G1158824
TU1321639 lncRNA downstream 123905 26666346 ~ 26666840 (+) True G1158896
TU1321653 lncRNA downstream 151803 26694244 ~ 26695407 (+) True G1158909
TU1321028 lncRNA downstream 161579 26704020 ~ 26753678 (+) False LOC110487360
XR_005035728.1 mRNA upstream 2104 26303402 ~ 26314343 (+) True LOC110487414
XR_005035734.1 mRNA upstream 60562 26253826 ~ 26255885 (+) True LOC118938455
XM_036942389.1 mRNA upstream 161217 26141541 ~ 26155230 (+) False LOC110487402
XM_036942388.1 mRNA upstream 161217 26145781 ~ 26155230 (+) False LOC110487402
XM_036942387.1 mRNA upstream 161217 26145821 ~ 26155230 (+) True LOC110487402
XM_021559284.2 mRNA downstream 6978 26549419 ~ 26555992 (+) False LOC110487357
XM_036942381.1 mRNA downstream 132798 26675239 ~ 26690594 (+) True LOC110487400
XR_005035715.1 mRNA downstream 182398 26724839 ~ 26752707 (+) False LOC110487360
XM_036942399.1 mRNA downstream 196627 26739068 ~ 26752707 (+) False LOC110487360
XM_036939727.1 mRNA downstream 271125 26813566 ~ 26817535 (+) True LOC118938063
TU1321331 other upstream 99053 26163799 ~ 26217394 (+) True G1158612
TU1321282 other upstream 200583 26110496 ~ 26115864 (+) True G1158563
TU1321019 other upstream 445044 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 842469 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 852989 25462927 ~ 25463458 (+) True G1157952
TU1321055 other downstream 566684 27109125 ~ 27169794 (+) False LOC110487383
TU1321965 other downstream 747796 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 950713 27493154 ~ 27768641 (+) True G1158342
TU1322228 other downstream 1233678 27776119 ~ 27781975 (+) False LOC110485129
TU1322229 other downstream 1234131 27776572 ~ 27782350 (+) False LOC110485129

Expression Profile