RNA id: TU1321451



Basic Information


Item Value
RNA id TU1321451
length 268
lncRNA type read_through
GC content 0.43
exon number 2
gene id G1158723
representative True

Chromosome Information


Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26402574 ~ 26480917 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ggatagccaggggcacactccaacactcagacatcatttacaaactaagcatttgtgtttagtgagtccgtcagatcagaggcagtagggacgaccagggatgttctctgtttagtgagtctgtcaggaAGGAGCAATGAATGGATAGTTCATTTATTTCCAAAGCTGCAATGATGGGACACACACAGTATGGATGAATGATCAGTAGTGACGGGATATAAATAGCACTCCCACAGCAATTCTACATAAATCTGCCCTATAATATACT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1321442 lncRNA upstream 12924 26387813 ~ 26389650 (+) True G1158714
TU1321370 lncRNA upstream 165069 26237066 ~ 26237505 (+) True G1158650
TU1321360 lncRNA upstream 175249 26221082 ~ 26227325 (+) True G1158640
TU1321281 lncRNA upstream 263436 26128783 ~ 26139138 (+) True G1158562
TU1321254 lncRNA upstream 307059 26089121 ~ 26095515 (+) True LOC110487386
TU1321458 lncRNA downstream 22406 26503323 ~ 26514040 (+) True LOC110487396
TU1321462 lncRNA downstream 53798 26534715 ~ 26535361 (+) True LOC118936356
TU1321460 lncRNA downstream 73010 26553927 ~ 26554885 (+) True LOC110487357
TU1321566 lncRNA downstream 88779 26569696 ~ 26570103 (+) True G1158824
TU1321639 lncRNA downstream 185429 26666346 ~ 26666840 (+) True G1158896
XM_021559316.2 mRNA upstream 22622 26373820 ~ 26379952 (+) True LOC110487384
XR_005035728.1 mRNA upstream 88231 26303402 ~ 26314343 (+) True LOC110487414
XR_005035734.1 mRNA upstream 146689 26253826 ~ 26255885 (+) True LOC118938455
XM_036942388.1 mRNA upstream 247344 26145781 ~ 26155230 (+) False LOC110487402
XM_036942380.1 mRNA downstream 22102 26503019 ~ 26514208 (+) False LOC110487396
XM_036942379.1 mRNA downstream 22103 26503020 ~ 26514208 (+) False LOC110487396
XM_036942411.1 mRNA downstream 48577 26529494 ~ 26535020 (+) False LOC118936356
XM_021559284.2 mRNA downstream 68502 26549419 ~ 26555992 (+) False LOC110487357
XM_036942381.1 mRNA downstream 194322 26675239 ~ 26690594 (+) True LOC110487400
TU1321331 other upstream 185180 26163799 ~ 26217394 (+) True G1158612
TU1321282 other upstream 286710 26110496 ~ 26115864 (+) True G1158563
TU1321019 other upstream 531171 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 928596 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 939116 25462927 ~ 25463458 (+) True G1157952
TU1321055 other downstream 628208 27109125 ~ 27169794 (+) False LOC110487383
TU1321965 other downstream 809320 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 1012237 27493154 ~ 27768641 (+) True G1158342
TU1322228 other downstream 1295202 27776119 ~ 27781975 (+) False LOC110485129
TU1322229 other downstream 1295655 27776572 ~ 27782350 (+) False LOC110485129

Expression Profile