RNA id: TU1321691


Basic Information

Item Value
RNA id TU1321691
length 732
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G1158946
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 26789143 ~ 26789958 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttattgacttgttaattgtttactccatgtgtaactctgtgttgttgtctgttcacactgctatgctttatcttggccaggtcgcagttgtaaatgagaaattgttctcaactagcctacctggttaaataaaggtgaaatatatatttttttaaatcatatctcttcccacattgattacaacTATGaggtttttctcctgtgtgtgtgttctctttggTGTCTAGTCCGCACACTAGATATAGTAAAACTCTTCCCGCATTgagcacagctataaggtttctctcctgtgtgtgttctctggtggtATATCAGGCTGCTTGGccgagtaaaactcttcccacattggttacagctaaaaggtttctctccggtgtgtgTTCTCCGGTGTACAACAAGATAGCTAGAACAAGTAAAAATCTTCCCACATTCATCACAGCTATACGATTTctttcctgtgtgtattctctggtgtgatatcaggtgGGTTGAcagagtaaaactcttcccacagtaaGAGCAGCAgtaaggtttctctcccgtgTGATTTCTCAGATGTATTTTAAGTTCTGATGAAGATTTTAAACATTTCCCACAATCAGAACAGCAGTGAGATCTGTTCCTTGTGGATCTGCGCAGGTGTTCTGctgtggagagactcttctctgccctgtcagcatcatgatgttgttgaggctccccagaggatacACAgtagttctgtctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1321028 lncRNA upstream 35465 26704020 ~ 26753678 (+) False LOC110487360
TU1321026 lncRNA upstream 60578 26724884 ~ 26728565 (+) True LOC110487360
TU1321653 lncRNA upstream 93736 26694244 ~ 26695407 (+) True G1158909
TU1321079 lncRNA upstream 118071 26257825 ~ 26671072 (+) True G1158376
TU1321639 lncRNA upstream 122303 26666346 ~ 26666840 (+) True G1158896
TU1321103 lncRNA downstream 8929 26798887 ~ 26897170 (+) True G1158400
TU1321743 lncRNA downstream 108455 26898413 ~ 26918768 (+) True G1158998
TU1321775 lncRNA downstream 152796 26942754 ~ 26949886 (+) True G1159030
TU1321781 lncRNA downstream 161070 26951028 ~ 27052827 (+) True G1159034
TU1321790 lncRNA downstream 184028 26973986 ~ 26974313 (+) True G1159041
XR_005035715.1 mRNA upstream 36436 26724839 ~ 26752707 (+) False LOC110487360
XM_036942399.1 mRNA upstream 36436 26739068 ~ 26752707 (+) False LOC110487360
XM_036942381.1 mRNA upstream 98549 26675239 ~ 26690594 (+) True LOC110487400
XM_021559284.2 mRNA upstream 233151 26549419 ~ 26555992 (+) False LOC110487357
XM_036942411.1 mRNA upstream 254123 26529494 ~ 26535020 (+) False LOC118936356
XM_036939727.1 mRNA downstream 23608 26813566 ~ 26817535 (+) True LOC118938063
XM_036939728.1 mRNA downstream 58732 26848690 ~ 26872255 (+) True LOC118938064
XM_036939730.1 mRNA downstream 185992 26975950 ~ 26979233 (+) True LOC110485124
trnak-uuu-6 mRNA downstream 257469 27047427 ~ 27047499 (+) True trnak-uuu-6
XM_021559314.2 mRNA downstream 318920 27108878 ~ 27122121 (+) False LOC110487383
TU1321331 other upstream 571749 26163799 ~ 26217394 (+) True G1158612
TU1321282 other upstream 673279 26110496 ~ 26115864 (+) True G1158563
TU1321019 other upstream 917740 25856632 ~ 25871403 (+) True LOC110516920
TU1320563 other upstream 1315165 25473122 ~ 25473978 (+) True G1157972
TU1320533 other upstream 1325685 25462927 ~ 25463458 (+) True G1157952
TU1321055 other downstream 319167 27109125 ~ 27169794 (+) False LOC110487383
TU1321965 other downstream 500279 27290237 ~ 27291218 (+) True LOC110485126
TU1321041 other downstream 703196 27493154 ~ 27768641 (+) True G1158342
TU1322228 other downstream 986161 27776119 ~ 27781975 (+) False LOC110485129
TU1322229 other downstream 986614 27776572 ~ 27782350 (+) False LOC110485129

Expression Profile