Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00042680 |
| length | 662 |
| lncRNA type | inter_gene |
| GC content | 0.50 |
| exon number | 2 |
| gene id | XLOC_021472 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 7402807 ~ 7435316 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006046 | N-acetylglucosamine catabolic process | biological_process |
| GO:0019262 | N-acetylneuraminate catabolic process | biological_process |
| GO:0006400 | tRNA modification | biological_process |
| GO:0009451 | RNA modification | biological_process |
| GO:0008263 | pyrimidine-specific mismatch base pair DNA N-glycosylase activity | molecular_function |
| GO:0000700 | mismatch base pair DNA N-glycosylase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00042677 | lncRNA | upstream | 49766 | 7350170 ~ 7355780 (+) | True | XLOC_021470 |
| TCONS_00044656 | lncRNA | upstream | 199351 | 7204539 ~ 7206195 (+) | False | XLOC_021469 |
| TCONS_00044655 | lncRNA | upstream | 199351 | 7204539 ~ 7206195 (+) | True | XLOC_021469 |
| TCONS_00044777 | lncRNA | upstream | 539590 | 6851931 ~ 6865956 (+) | True | XLOC_021467 |
| TCONS_00042670 | lncRNA | upstream | 753399 | 6635172 ~ 6652147 (+) | True | XLOC_021463 |
| TCONS_00042690 | lncRNA | downstream | 1279124 | 8687571 ~ 8699993 (+) | True | XLOC_021478 |
| TCONS_00044781 | lncRNA | downstream | 1379548 | 8787995 ~ 8811577 (+) | False | XLOC_021479 |
| TCONS_00044657 | lncRNA | downstream | 1400912 | 8809359 ~ 8811654 (+) | True | XLOC_021479 |
| TCONS_00044782 | lncRNA | downstream | 1988221 | 9396668 ~ 9403617 (+) | True | XLOC_021490 |
| TCONS_00044658 | lncRNA | downstream | 2457254 | 9865701 ~ 9865938 (+) | True | XLOC_021495 |
| TCONS_00042678 | mRNA | upstream | 14518 | 7379728 ~ 7391028 (+) | True | XLOC_021471 |
| TCONS_00042676 | mRNA | upstream | 462055 | 6926183 ~ 6943491 (+) | True | XLOC_021468 |
| TCONS_00042673 | mRNA | upstream | 564301 | 6795531 ~ 6841245 (+) | False | XLOC_021465 |
| TCONS_00042674 | mRNA | upstream | 592107 | 6795709 ~ 6813439 (+) | True | XLOC_021465 |
| TCONS_00042672 | mRNA | upstream | 616513 | 6752828 ~ 6789033 (+) | True | XLOC_021464 |
| TCONS_00042681 | mRNA | downstream | 62625 | 7471072 ~ 7504017 (+) | True | XLOC_021473 |
| TCONS_00042682 | mRNA | downstream | 97496 | 7505943 ~ 7545960 (+) | False | XLOC_021474 |
| TCONS_00042683 | mRNA | downstream | 109847 | 7518294 ~ 7540612 (+) | True | XLOC_021474 |
| TCONS_00042684 | mRNA | downstream | 140350 | 7548797 ~ 7578892 (+) | True | XLOC_021475 |
| TCONS_00042685 | mRNA | downstream | 283595 | 7692042 ~ 7709134 (+) | True | XLOC_021476 |
| TCONS_00042675 | other | upstream | 579744 | 6825688 ~ 6825802 (+) | True | XLOC_021466 |
| TCONS_00042666 | other | upstream | 1101272 | 6277175 ~ 6304274 (+) | True | XLOC_021459 |
| TCONS_00042596 | other | upstream | 3670537 | 3721041 ~ 3735009 (+) | False | XLOC_021425 |
| TCONS_00042520 | other | upstream | 6963194 | 442237 ~ 442352 (+) | True | XLOC_021384 |
| TCONS_00042519 | other | upstream | 6992887 | 412542 ~ 412659 (+) | True | XLOC_021383 |
| TCONS_00042706 | other | downstream | 1899127 | 9307574 ~ 9308561 (+) | True | XLOC_021488 |
| TCONS_00042716 | other | downstream | 2209766 | 9618213 ~ 9618335 (+) | True | XLOC_021493 |
| TCONS_00042717 | other | downstream | 2318963 | 9727410 ~ 9727432 (+) | True | XLOC_021494 |
| TCONS_00042720 | other | downstream | 2738105 | 10146552 ~ 10158901 (+) | False | XLOC_021498 |
| TCONS_00042723 | other | downstream | 2939430 | 10347877 ~ 10350429 (+) | False | XLOC_021499 |
