RNA id: TU1322589


Basic Information

Item Value
RNA id TU1322589
length 258
lncRNA type intronic
GC content 0.41
exon number 2
gene id G1159742
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 28483846 ~ 28485979 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCAATGTTGtcgttaggtgaagttatgggttctacagtaggtctatgtcaGGTGAAGTTATTGgtcctacagtaggcctatgtcaTTGTTAGGTGAAGATGTGGGTCATACAGTAGgtttatgttgttgttaggtgaagttatgtgTCCTACAGTAGAGCTATGTTGTTtgctaggtgaagttatgggtccaacAGTAGGTTTATGtaaggtgaagttatgggtcctacagtagagctatgttgttgttgttaggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1322558 lncRNA upstream 15539 28458999 ~ 28468307 (+) True G1159715
TU1322561 lncRNA upstream 30790 28446555 ~ 28453056 (+) True G1159717
TU1322562 lncRNA upstream 37381 28438577 ~ 28446465 (+) True G1159718
TU1322563 lncRNA upstream 45784 28412541 ~ 28438062 (+) True G1159719
TU1322630 lncRNA downstream 58567 28544546 ~ 28550485 (+) True G1159779
TU1322632 lncRNA downstream 65863 28551842 ~ 28552803 (+) True G1159781
TU1322675 lncRNA downstream 144320 28630299 ~ 28632208 (+) True G1159821
TU1322353 lncRNA downstream 174588 28660567 ~ 28700243 (+) True G1159547
TU1322703 lncRNA downstream 184067 28670046 ~ 28671329 (+) True G1159847
XM_021593186.2 mRNA upstream 135310 28338501 ~ 28348536 (+) False LOC110513252
XR_005035513.1 mRNA upstream 146521 28336680 ~ 28337325 (+) True LOC118938258
XM_021559289.2 mRNA upstream 282252 28180784 ~ 28201594 (+) True LOC110487363
LOC110487371 mRNA upstream 406244 28074969 ~ 28077602 (+) True LOC110487371
XR_005035510.1 mRNA upstream 419178 28061766 ~ 28064668 (+) True LOC118938252
XM_021559308.2 mRNA downstream 109986 28595965 ~ 28603570 (+) True LOC110487378
XM_036940702.1 mRNA downstream 118610 28604589 ~ 28608693 (+) True LOC118938254
XM_036940706.1 mRNA downstream 221716 28707695 ~ 28713789 (+) False LOC110487366
XM_036940703.1 mRNA downstream 230839 28716818 ~ 28721736 (+) True LOC118938259
LOC118938260 mRNA downstream 265533 28751512 ~ 28753479 (+) True LOC118938260
TU1322524 other upstream 225872 28252530 ~ 28257974 (+) True G1159684
TU1322442 other upstream 358208 28119665 ~ 28125638 (+) True G1159631
TU1321052 other upstream 618139 27863508 ~ 27865707 (+) True LOC118938246
TU1322233 other upstream 697681 27780222 ~ 27786165 (+) False G1159435
TU1322806 other downstream 332755 28818734 ~ 28819448 (+) True G1159924
TU1325076 other downstream 812779 29298758 ~ 29299656 (+) True G1161908
TU1325047 other downstream 878073 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325585 other downstream 1008383 29494362 ~ 29494902 (+) True G1162364
TU1326020 other downstream 1344775 29830754 ~ 29831296 (+) True G1162753

Expression Profile