RNA id: TU1322706


Basic Information

Item Value
RNA id TU1322706
length 385
lncRNA type read_through
GC content 0.41
exon number 2
gene id G1159849
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 28672650 ~ 28780325 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtaggtagttggatgggctgtgtacagctgcatcgatcggtaagctgctcagatagctgatgcttaaagttagtgagggagatatacgtctccaacttcagcgattttctCAATTCGTTCcaaacattggcagcagagaactggaaggaaaggaggccaaaggaggtgttggctttggggatgaccagtgagatatacagtggggcaaaaaagtatttagtaagccaccaattgtgcaagttctcccacttaaaaagatgagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatgagaaaagaaaatccagaaaatcacattgtaggatttttaatgaatttatttgcaaatgatggtggaaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1322703 lncRNA upstream 1321 28670046 ~ 28671329 (+) True G1159847
TU1322675 lncRNA upstream 40442 28630299 ~ 28632208 (+) True G1159821
TU1322632 lncRNA upstream 119847 28551842 ~ 28552803 (+) True G1159781
TU1322630 lncRNA upstream 122165 28544546 ~ 28550485 (+) True G1159779
TU1322586 lncRNA upstream 177754 28479024 ~ 28494896 (+) True G1159741
TU1322761 lncRNA downstream 3105 28783430 ~ 28784093 (+) True G1159897
TU1322770 lncRNA downstream 6222 28786547 ~ 28788374 (+) False G1159901
TU1322774 lncRNA downstream 6222 28786547 ~ 28788374 (+) False G1159901
TU1322777 lncRNA downstream 6222 28786547 ~ 28788374 (+) False G1159901
TU1322779 lncRNA downstream 6222 28786547 ~ 28788374 (+) True G1159901
XM_036940702.1 mRNA upstream 63957 28604589 ~ 28608693 (+) True LOC118938254
XM_021559308.2 mRNA upstream 69080 28595965 ~ 28603570 (+) True LOC110487378
LOC110487355 mRNA upstream 171981 28472333 ~ 28500669 (+) False LOC110487355
XM_021593186.2 mRNA upstream 324114 28338501 ~ 28348536 (+) False LOC110513252
XR_005035513.1 mRNA upstream 335325 28336680 ~ 28337325 (+) True LOC118938258
XM_021557381.2 mRNA downstream 79210 28859535 ~ 28860605 (+) True LOC110486062
XM_021557384.2 mRNA downstream 388076 29168401 ~ 29172521 (+) True rrp36
XM_036940718.1 mRNA downstream 486293 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940719.1 mRNA downstream 486293 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940720.1 mRNA downstream 486293 29266618 ~ 29367748 (+) False si:ch211-126j24.1
TU1322370 other upstream 173444 28472676 ~ 28499206 (+) True LOC110487355
TU1322524 other upstream 414676 28252530 ~ 28257974 (+) True G1159684
TU1322442 other upstream 547012 28119665 ~ 28125638 (+) True G1159631
TU1321052 other upstream 806943 27863508 ~ 27865707 (+) True LOC118938246
TU1322234 other upstream 886485 27780222 ~ 27786165 (+) True G1159435
TU1322806 other downstream 38409 28818734 ~ 28819448 (+) True G1159924
TU1325076 other downstream 518433 29298758 ~ 29299656 (+) True G1161908
TU1325047 other downstream 583727 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325585 other downstream 714037 29494362 ~ 29494902 (+) True G1162364
TU1326020 other downstream 1050429 29830754 ~ 29831296 (+) True G1162753

Expression Profile