RNA id: TU1324980


Basic Information

Item Value
RNA id TU1324980
length 441
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1161822
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 29177298 ~ 29177894 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAAAAAAACTCCCATGTCAGAGTCATTTTTAGGATGATGTTATGACACTGCTAAGACAAACTCTGAGCCAGGAGTAAAAAAATAACTGATGATCAAAGGGCCCCACCCCGGTTGGTAATTCGACCGGGGtgcttactacaagtttagatagctggccactagactaacttaccaatcaagACAAATTTGcggacatgggctaattgagtgactgcggATGCACAGCCAAATTTCAAATGTGTACCTTGTGTACTATACTGTTTCACGTAGGTCTAGATTATGTAATGGTTGATCATATAGAAATACCAAAACATTCTTTCAACAACTCCAAAGCAATTGCCTGTCTATGGCGCAGGAACTACTAACTCGCTGCCTTTTTCTATTTTCAAGACATCTGCTGATAACACTTAACCCCATAAAGTTGTTTTTCACTACCTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1324920 lncRNA upstream 4028 29172755 ~ 29173426 (+) True G1161768
TU1324978 lncRNA upstream 12217 29165036 ~ 29165237 (+) True G1161821
TU1324729 lncRNA upstream 318348 28858872 ~ 28859106 (+) True G1161592
TU1324704 lncRNA upstream 335857 28841377 ~ 28841597 (+) True G1161567
TU1324701 lncRNA upstream 337771 28838493 ~ 28839683 (+) True G1161564
TU1324987 lncRNA downstream 1196 29179090 ~ 29179331 (+) True G1161823
TU1324989 lncRNA downstream 4182 29182076 ~ 29182279 (+) True G1161825
TU1324997 lncRNA downstream 17722 29195616 ~ 29195821 (+) True G1161833
TU1325001 lncRNA downstream 20390 29198284 ~ 29198533 (+) True G1161837
TU1325061 lncRNA downstream 104996 29282890 ~ 29283116 (+) True G1161893
XM_021557384.2 mRNA upstream 4933 29168401 ~ 29172521 (+) True rrp36
XM_021557381.2 mRNA upstream 316849 28859535 ~ 28860605 (+) True LOC110486062
XM_036940704.1 mRNA upstream 402514 28768216 ~ 28774940 (+) True LOC110485131
LOC118938260 mRNA upstream 423975 28751512 ~ 28753479 (+) True LOC118938260
XM_036940703.1 mRNA upstream 455718 28716818 ~ 28721736 (+) True LOC118938259
XM_036940718.1 mRNA downstream 88724 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940719.1 mRNA downstream 88724 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940720.1 mRNA downstream 88724 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_036940721.1 mRNA downstream 88724 29266618 ~ 29367748 (+) False si:ch211-126j24.1
XM_021557391.2 mRNA downstream 195407 29373301 ~ 29409473 (+) False LOC110486069
TU1322806 other upstream 358006 28818734 ~ 28819448 (+) True G1159924
TU1322364 other upstream 478633 28338985 ~ 28698821 (+) True LOC110513252
TU1322370 other upstream 678248 28472676 ~ 28499206 (+) True LOC110487355
TU1322524 other upstream 919480 28252530 ~ 28257974 (+) True G1159684
TU1322442 other upstream 1051816 28119665 ~ 28125638 (+) True G1159631
TU1325076 other downstream 120864 29298758 ~ 29299656 (+) True G1161908
TU1325047 other downstream 186158 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325585 other downstream 316468 29494362 ~ 29494902 (+) True G1162364
TU1326020 other downstream 652860 29830754 ~ 29831296 (+) True G1162753
TU1327390 other downstream 1936417 31114311 ~ 31119677 (+) True LOC110486104

Expression Profile