RNA id: TCONS_00042706



Basic Information


Item Value
RNA id TCONS_00042706
length 651
RNA type processed_transcript
GC content 0.30
exon number 2
gene id XLOC_021488
representative True

Chromosome Information


Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 9307574 ~ 9308561 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


TACAactatatctagtcaaatattatttactgtcatcctggcaaagagaaaataaatcagtaattagaaatgagttattaagactattatgattaaagatgtgttgaaaaaaaacttctctgctttaaagagaaattgggggaaaaataaacagggtatcttataattcagggggctaataaacctgacttcaactgtatacaaacatatttttctGGCAAACATGTTACATAACATGCTTTATACATTTATGTGACATATGTTTCAGGCATATATATTACATGTATGTTTCTGACATTTATGTGACATACAgtgtatgtttctggcatatacagttgaaaccagaaggtTACATACACTaatataaaaaggcacataaccatttaaaaaagtcagatgttgtgtgactaaactttttctcatTTAGGTAAATTAGGAttgtcaaatttgtttctgttatgcttaatagcagaataatgagagagatattttttaagaaattgttataacggtcacactttacaataagattattatgcatcTGAAAAAgttcagatgatggtgtcaaggttttggaagtttctaattggctaattgacaacatttaagttaattggaggcacagctgtagaatagtatttagggaaaacc

Function


GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000144602

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00044657 lncRNA upstream 495920 8809359 ~ 8811654 (+) True XLOC_021479
TCONS_00044781 lncRNA upstream 495997 8787995 ~ 8811577 (+) False XLOC_021479
TCONS_00042690 lncRNA upstream 607581 8687571 ~ 8699993 (+) True XLOC_021478
TCONS_00044780 lncRNA upstream 1872258 7405267 ~ 7435316 (+) False XLOC_021472
TCONS_00042680 lncRNA upstream 1899127 7405546 ~ 7408447 (+) True XLOC_021472
TCONS_00044782 lncRNA downstream 88107 9396668 ~ 9403617 (+) True XLOC_021490
TCONS_00044658 lncRNA downstream 557140 9865701 ~ 9865938 (+) True XLOC_021495
TCONS_00044783 lncRNA downstream 629684 9938245 ~ 9952826 (+) False XLOC_021497
TCONS_00044785 lncRNA downstream 629713 9938274 ~ 9952826 (+) False XLOC_021497
TCONS_00044784 lncRNA downstream 629713 9938274 ~ 9952826 (+) True XLOC_021497
TCONS_00042702 mRNA upstream 15682 9230431 ~ 9291892 (+) False XLOC_021487
TCONS_00042701 mRNA upstream 15682 9230431 ~ 9291892 (+) False XLOC_021487
TCONS_00042700 mRNA upstream 15682 9230431 ~ 9291892 (+) False XLOC_021487
TCONS_00042705 mRNA upstream 19129 9268083 ~ 9288445 (+) True XLOC_021487
TCONS_00042704 mRNA upstream 21946 9258531 ~ 9285628 (+) False XLOC_021487
TCONS_00042707 mRNA downstream 44991 9353552 ~ 9357627 (+) True XLOC_021489
TCONS_00042708 mRNA downstream 199977 9508538 ~ 9551967 (+) False XLOC_021491
TCONS_00042709 mRNA downstream 214220 9522781 ~ 9533243 (+) False XLOC_021491
TCONS_00042710 mRNA downstream 214381 9522942 ~ 9535681 (+) True XLOC_021491
TCONS_00042711 mRNA downstream 252236 9560797 ~ 9567173 (+) False XLOC_021492
TCONS_00042675 other upstream 2481772 6825688 ~ 6825802 (+) True XLOC_021466
TCONS_00042666 other upstream 3003300 6277175 ~ 6304274 (+) True XLOC_021459
TCONS_00042596 other upstream 5572565 3721041 ~ 3735009 (+) False XLOC_021425
TCONS_00042520 other upstream 8865222 442237 ~ 442352 (+) True XLOC_021384
TCONS_00042519 other upstream 8894915 412542 ~ 412659 (+) True XLOC_021383
TCONS_00042716 other downstream 309652 9618213 ~ 9618335 (+) True XLOC_021493
TCONS_00042717 other downstream 418849 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042720 other downstream 837991 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042723 other downstream 1039316 10347877 ~ 10350429 (+) False XLOC_021499
TCONS_00042724 other downstream 1042330 10350891 ~ 10351573 (+) True XLOC_021499

Expression Profile


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