Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00042709 |
| length | 685 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 5 |
| gene id | XLOC_021491 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 9508538 ~ 9551967 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006869 | lipid transport | biological_process |
| GO:0005829 | cytosol | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0015485 | cholesterol binding | molecular_function |
| GO:0015248 | sterol transporter activity | molecular_function |
| GO:0032934 | sterol binding | molecular_function |
| GO:0008289 | lipid binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-030131-6138 | Predicted to enable cholesterol binding activity and sterol transporter activity. Predicted to act upstream of or within lipid transport. Predicted to be active in cytosol; intracellular membrane-bounded organelle; and membrane. Is expressed in several structures, including blastodisc; digestive system; nervous system; otic vesicle; and yolk syncytial layer. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness 67. Orthologous to human OSBPL2 (oxysterol binding protein like 2). |
| ensembl_id | ENSDART00000136486 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00044782 | lncRNA | upstream | 119164 | 9396668 ~ 9403617 (+) | True | XLOC_021490 |
| TCONS_00044657 | lncRNA | upstream | 711127 | 8809359 ~ 8811654 (+) | True | XLOC_021479 |
| TCONS_00044781 | lncRNA | upstream | 711204 | 8787995 ~ 8811577 (+) | False | XLOC_021479 |
| TCONS_00042690 | lncRNA | upstream | 822788 | 8687571 ~ 8699993 (+) | True | XLOC_021478 |
| TCONS_00042680 | lncRNA | upstream | 2114334 | 7405546 ~ 7408447 (+) | True | XLOC_021472 |
| TCONS_00044658 | lncRNA | downstream | 332458 | 9865701 ~ 9865938 (+) | True | XLOC_021495 |
| TCONS_00044783 | lncRNA | downstream | 405002 | 9938245 ~ 9952826 (+) | False | XLOC_021497 |
| TCONS_00044785 | lncRNA | downstream | 405031 | 9938274 ~ 9952826 (+) | False | XLOC_021497 |
| TCONS_00044784 | lncRNA | downstream | 405031 | 9938274 ~ 9952826 (+) | True | XLOC_021497 |
| TCONS_00042721 | lncRNA | downstream | 613371 | 10146614 ~ 10156528 (+) | True | XLOC_021498 |
| TCONS_00042707 | mRNA | upstream | 165154 | 9353552 ~ 9357627 (+) | True | XLOC_021489 |
| TCONS_00042700 | mRNA | upstream | 230889 | 9230431 ~ 9291892 (+) | False | XLOC_021487 |
| TCONS_00042711 | mRNA | downstream | 27554 | 9560797 ~ 9567173 (+) | False | XLOC_021492 |
| TCONS_00042712 | mRNA | downstream | 27748 | 9560991 ~ 9567306 (+) | False | XLOC_021492 |
| TCONS_00042713 | mRNA | downstream | 27767 | 9561010 ~ 9567119 (+) | False | XLOC_021492 |
| TCONS_00042714 | mRNA | downstream | 27773 | 9561016 ~ 9567194 (+) | False | XLOC_021492 |
| TCONS_00042715 | mRNA | downstream | 27774 | 9561017 ~ 9566029 (+) | True | XLOC_021492 |
| TCONS_00042706 | other | upstream | 214220 | 9307574 ~ 9308561 (+) | True | XLOC_021488 |
| TCONS_00042675 | other | upstream | 2696979 | 6825688 ~ 6825802 (+) | True | XLOC_021466 |
| TCONS_00042666 | other | upstream | 3218507 | 6277175 ~ 6304274 (+) | True | XLOC_021459 |
| TCONS_00042596 | other | upstream | 5787772 | 3721041 ~ 3735009 (+) | False | XLOC_021425 |
| TCONS_00042520 | other | upstream | 9080429 | 442237 ~ 442352 (+) | True | XLOC_021384 |
| TCONS_00042716 | other | downstream | 84970 | 9618213 ~ 9618335 (+) | True | XLOC_021493 |
| TCONS_00042717 | other | downstream | 194167 | 9727410 ~ 9727432 (+) | True | XLOC_021494 |
| TCONS_00042720 | other | downstream | 613309 | 10146552 ~ 10158901 (+) | False | XLOC_021498 |
| TCONS_00042723 | other | downstream | 814634 | 10347877 ~ 10350429 (+) | False | XLOC_021499 |
| TCONS_00042724 | other | downstream | 817648 | 10350891 ~ 10351573 (+) | True | XLOC_021499 |
