RNA id: TU1328585


Basic Information

Item Value
RNA id TU1328585
length 293
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1164993
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 31918748 ~ 31919040 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acattaatatgtaaataaacaatcaaatgtaAGACTGAGAacagtatgttcattaccggagataaataacgaagtgcgcACTCTCATCCACGCGCCATaatactacagccaaaatgggagccacctagaaaaactacattCTAGCTGTTTTTTctaaaaacaagcctgaaactctttctgaAGACTGTTGGCCTACTGGAAGCCCTAGAGACTGCAATCTGAGGGGTATTCCGTTGATATTCCCATAGACAGCCATTTCAATGAGTGGTGagctccaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1328176 lncRNA upstream 107749 31718603 ~ 31810999 (+) True G1164619
TU1328179 lncRNA upstream 111200 31717508 ~ 31807548 (+) True G1164620
TU1328181 lncRNA upstream 171426 31742726 ~ 31747322 (+) True G1164622
TU1328174 lncRNA upstream 264045 31654315 ~ 31654703 (+) True G1164618
TU1328168 lncRNA upstream 282889 31635518 ~ 31635859 (+) True G1164612
TU1328818 lncRNA downstream 234911 32153951 ~ 32154176 (+) True G1165223
TU1328698 lncRNA downstream 236980 32156020 ~ 32158937 (+) True LOC110486134
TU1328926 lncRNA downstream 241254 32160294 ~ 32161004 (+) True G1165325
TU1328958 lncRNA downstream 263693 32182733 ~ 32183884 (+) False G1165355
TU1328961 lncRNA downstream 263693 32182733 ~ 32184968 (+) False G1165355
XM_036939718.1 mRNA upstream 209008 31701964 ~ 31709740 (+) False il2rb2
NM_001278936.1 mRNA upstream 209227 31702090 ~ 31709521 (+) True il2rb2
XR_002468281.2 mRNA upstream 226480 31691533 ~ 31692268 (+) True LOC110487528
XM_021557502.2 mRNA upstream 228543 31684474 ~ 31690205 (+) True LOC110486131
XM_021557500.2 mRNA upstream 244858 31666240 ~ 31673890 (+) True LOC110486130
XM_036940770.1 mRNA downstream 82701 32001741 ~ 32159164 (+) False LOC110486134
XM_036940771.1 mRNA downstream 349176 32268216 ~ 32289324 (+) False LOC110486136
XM_036940772.1 mRNA downstream 349177 32268217 ~ 32289324 (+) True LOC110486136
XM_036940773.1 mRNA downstream 371301 32290341 ~ 32370648 (+) False LOC110486139
XM_036940775.1 mRNA downstream 371301 32290341 ~ 32370648 (+) False LOC110486139
TU1327390 other upstream 799071 31114311 ~ 31119677 (+) True LOC110486104
TU1326020 other upstream 2087452 29830754 ~ 29831296 (+) True G1162753
TU1325585 other upstream 2423846 29494362 ~ 29494902 (+) True G1162364
TU1325047 other upstream 2547801 29364052 ~ 29370947 (+) True si:ch211-126j24.1
TU1325076 other upstream 2619092 29298758 ~ 29299656 (+) True G1161908
TU1328699 other downstream 82711 32001751 ~ 32110733 (+) False LOC110486134
TU1329495 other downstream 796216 32715256 ~ 32722462 (+) True ifn2
TU1329888 other downstream 1310073 33229113 ~ 33230483 (+) True LOC110486146
TU1330025 other downstream 1320913 33239953 ~ 33249208 (+) False G1166318
TU1330567 other downstream 1871600 33790640 ~ 33803665 (+) True G1166779

Expression Profile