RNA id: TU1331645


Basic Information

Item Value
RNA id TU1331645
length 1350
lncRNA type antisense_over
GC content 0.34
exon number 1
gene id G1167741
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 34862144 ~ 34863493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTCAGTACTCAGCATTAGGGGTTATAATATGGACAGGTTTTGTTAAGAAATGAATTATGAAAACATAGTTTATAAAAGTGTGTAGTAGGCATTACATACATGTATGAAACAAAAAAGTTAGAACTGAAAATGATTCATTATAGTTGTTCAAACCTAATCCTTTCTAATCTAACCGTAATGATGGTTGGAAGTGTCCACTTTTAACCAATTCTGGAGAAAACAATTAAAATATAGTTAGTTGTCCTGTGGTCTAGTTAGCACATTGCTCTTAAAAATCACTTCACTGTCACTTTATATTTCACTTACTAGCACCAGCGCTCCCAGTAAAAGGTGTTCACACAGACCTTTGAATAGTCAAAACGCAATTAAATAAAAGAAATACTAATAAATACAAGGGTTACGATTAAGGTGTAACAAAAACTTAAAGAGAATGAGGACTGAACGCACAAACAATTCACAAAGTCATCCCTTTTGAGTGTGAGCTTTTTGTGAAACAAAAGGAAGTCCAGTCTGACTTGAGGGGAGACGGTCACAACATCACTTCAGAAATAATTCCTTAAATCTTTGTACTGCAATCAAAAACACACATTATACAAGTTCCCCGTTTATTGTACAagggactttctttttttttttgtaaaaccaTAACAAATTGAGACAACATGGAGGAGTACTGTAACAAGTGTTCTTTGGGAGTCCTTCATACTTGACTCCATGTCAATTATACATACAGGATGAATAGTCAGGGGTAAGTGTAAGGAAAGGGGGTGGTTACAACACAGCTCCTAAACAGAGATCCTAAGACTAGCGTTTTCCATTACAAGTGTTAATATAAATAAATGCATTCTACAATGATCTGTTTTATAAAAGTCAACTGTAAATAATACAGTCAGAAGTACGATTACGATACAGGATAAAACCAAATGCCGGCATGGGCCTAACAATATACATTTTCTTtccttttttttcctttttttttttttttaaaaccacaACTTATTGTCTATACATGTTTACTAGTTAGGCGCAGTGTTTAAAATATGGGTGCCCagaaacattattattatttttttttaaatattaggAGGAATACACAAATGTGATGCCAGAAAGAAGCAACCGATAAAGAGCATTGCTGTCATCTGCAGAATAATAAGGTTTGAAGCTCATCTTCGTGCTGCAAGAAACACACAAGTTAGAAAACGATTAGAACCTCACAAGAGAGCAATACACCCTCAGGTCAGTTCTATATTACAGAAATGTGACATCTCCATCCACTGCATTAATTCACCGTTAAAACTACATTTTTACAATGCCAAAGTACATCTCCACTCTTGGTTCCAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1331846 lncRNA upstream 7213 34854695 ~ 34854931 (+) True G1167933
TU1331844 lncRNA upstream 9170 34852770 ~ 34852974 (+) True G1167931
TU1331738 lncRNA upstream 162933 34698976 ~ 34699211 (+) True G1167831
TU1331713 lncRNA upstream 177516 34652483 ~ 34684628 (+) True G1167807
TU1331608 lncRNA upstream 217318 34641785 ~ 34644826 (+) False G1167715
TU1331847 lncRNA downstream 8329 34871822 ~ 34872185 (+) True G1167934
TU1331849 lncRNA downstream 10891 34874384 ~ 34874615 (+) True G1167936
TU1331872 lncRNA downstream 69745 34933238 ~ 34933462 (+) True G1167958
TU1331874 lncRNA downstream 71179 34934672 ~ 34934886 (+) True G1167960
TU1331875 lncRNA downstream 72177 34935670 ~ 34935918 (+) True G1167961
NM_001124457.1 mRNA upstream 17877 34782778 ~ 34844267 (+) True LOC100136181
LOC110485154 mRNA upstream 86893 34771005 ~ 34775251 (+) True LOC110485154
LOC110486188 mRNA upstream 174474 34680909 ~ 34687670 (+) False LOC110486188
XM_036940851.1 mRNA upstream 184010 34643750 ~ 34678134 (+) False LOC110486187
XM_036940853.1 mRNA downstream 31278 34894771 ~ 34902807 (+) False LOC110486194
XM_021557615.2 mRNA downstream 31291 34894784 ~ 34906048 (+) True LOC110486194
XM_021557618.2 mRNA downstream 55838 34919331 ~ 34932630 (+) True LOC110486195
LOC110485155 mRNA downstream 74072 34937565 ~ 34947362 (+) True LOC110485155
XM_021557621.2 mRNA downstream 111622 34975115 ~ 34998416 (+) False LOC110486197
TU1331612 other upstream 174494 34681188 ~ 34687650 (+) True LOC110486188
TU1330567 other upstream 1058479 33790640 ~ 33803665 (+) True G1166779
TU1330025 other upstream 1612936 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 1631661 33229113 ~ 33230483 (+) True LOC110486146
TU1329495 other upstream 2139682 32715256 ~ 32722462 (+) True ifn2
TU1333280 other downstream 1126363 35989856 ~ 35992600 (+) True G1169121
TU1333368 other downstream 1304135 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 1306403 36169896 ~ 36171571 (+) True G1169208
TU1333509 other downstream 1474600 36338093 ~ 36339356 (+) True LOC110486232
TU1333650 other downstream 1687528 36551021 ~ 36566778 (+) False LOC110486241

Expression Profile