RNA id: TCONS_00044786


Basic Information

Item Value
RNA id TCONS_00044786
length 403
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id XLOC_021505
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 11224124 ~ 11224605 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGATTGCAGGGAAAATGGAAACATGCACATGAAAGCCATGCAAGTGCGTGTATGTCTTCAGTCTGCGCTCCACAAGCGGTAAAATGAGAGATGCTGACATCGCAGTCACTGAGATTTCGGGAAAACCATTTTGTCCAAGTCTTTGCTtccagaaaaagagagagaaagagaggggatGAAGAAAAGCGCAGGCTGTCGCGGGGTTTCGCCCTTTCTCCTTCGGTACTTCACCCCGGAATATAATCCAGTTTGGCTGCCTCTGGGAAACTGCGCTCAAAGGCAGACAGTCCTGCTCCTCCTGTGCCCAGTACACCTCGCCGGATTCACAGCCATTCACTGCGAGAGAGAGACGCTGTATGCGGCCAGATTTCCATTGAGCGTGTCCAGCCAGCTCAGGTCCAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042733 lncRNA upstream 409627 10814030 ~ 10814497 (+) True XLOC_021504
TCONS_00042721 lncRNA upstream 1067596 10146614 ~ 10156528 (+) True XLOC_021498
TCONS_00044783 lncRNA upstream 1271298 9938245 ~ 9952826 (+) False XLOC_021497
TCONS_00044785 lncRNA upstream 1271298 9938274 ~ 9952826 (+) False XLOC_021497
TCONS_00044784 lncRNA upstream 1271298 9938274 ~ 9952826 (+) True XLOC_021497
TCONS_00042736 lncRNA downstream 122831 11347436 ~ 11374684 (+) False XLOC_021506
TCONS_00042740 lncRNA downstream 624143 11848748 ~ 11851894 (+) True XLOC_021507
TCONS_00044787 lncRNA downstream 982826 12207431 ~ 12207959 (+) False XLOC_021513
TCONS_00044788 lncRNA downstream 1034931 12259536 ~ 12279048 (+) True XLOC_021514
TCONS_00044789 lncRNA downstream 1448798 12673403 ~ 12830266 (+) False XLOC_021518
TCONS_00042732 mRNA upstream 396705 10805188 ~ 10827419 (+) False XLOC_021504
TCONS_00042730 mRNA upstream 636867 10469955 ~ 10587257 (+) True XLOC_021502
TCONS_00042726 mRNA upstream 771047 10396842 ~ 10453077 (+) False XLOC_021501
TCONS_00042734 mRNA downstream 61057 11285662 ~ 11452312 (+) False XLOC_021506
TCONS_00042735 mRNA downstream 122708 11347313 ~ 11448747 (+) False XLOC_021506
TCONS_00042737 mRNA downstream 149563 11374168 ~ 11448740 (+) True XLOC_021506
TCONS_00042738 mRNA downstream 444504 11669109 ~ 11861393 (+) False XLOC_021507
TCONS_00042739 mRNA downstream 444732 11669337 ~ 11859349 (+) False XLOC_021507
TCONS_00042731 other upstream 617578 10601324 ~ 10606546 (+) True XLOC_021503
TCONS_00042724 other upstream 872551 10350891 ~ 10351573 (+) True XLOC_021499
TCONS_00042723 other upstream 873695 10347877 ~ 10350429 (+) False XLOC_021499
TCONS_00042720 other upstream 1065223 10146552 ~ 10158901 (+) False XLOC_021498
TCONS_00042717 other upstream 1496692 9727410 ~ 9727432 (+) True XLOC_021494
TCONS_00042741 other downstream 710979 11935584 ~ 11935700 (+) True XLOC_021508
TCONS_00042743 other downstream 858952 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042745 other downstream 910234 12134839 ~ 12150667 (+) False XLOC_021511
TCONS_00042749 other downstream 989362 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042766 other downstream 2218003 13442608 ~ 13442722 (+) True XLOC_021525