RNA id: TU1333220


Basic Information

Item Value
RNA id TU1333220
length 245
lncRNA type antisense_over
GC content 0.67
exon number 1
gene id G1169061
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 35922254 ~ 35922498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCAGCTGCAGCACGTAGATACGCATCAGCCCGTCTCCCTGGATACGCCGCCGCCCGTCATGGCGTACCTTGGGCTTGGGCCGCGGGGCCAGCGGGTCGACCCGGCGAGGGGGCTCGGGCTCAGGCACCTCGTAGATCATAGGGTCATCCTcttggtcctggtcctggtcctccTCTATACCCCGGTGCTGCCGCGCCCCGAAGCAGATCTTCCTGGGCCTCCGATGGGTGtatccccctccacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1333215 lncRNA upstream 2019 35919483 ~ 35920235 (+) True G1169056
TU1333229 lncRNA upstream 38871 35883129 ~ 35883383 (+) True G1169070
TU1333221 lncRNA upstream 48724 35873309 ~ 35873530 (+) True G1169062
TU1333208 lncRNA upstream 52512 35869407 ~ 35869742 (+) True G1169050
TU1333206 lncRNA upstream 53754 35868247 ~ 35868500 (+) True G1169048
TU1333246 lncRNA downstream 8011 35930509 ~ 35930892 (+) True G1169087
TU1333250 lncRNA downstream 13840 35936338 ~ 35936574 (+) True G1169091
TU1333262 lncRNA downstream 34972 35957470 ~ 35957684 (+) True G1169103
TU1333274 lncRNA downstream 53574 35976072 ~ 35976634 (+) True G1169115
TU1333275 lncRNA downstream 54344 35976842 ~ 35977062 (+) True G1169116
XM_036940925.1 mRNA upstream 13011 35900832 ~ 35909243 (+) False st8sia6
XM_036940926.1 mRNA upstream 13011 35901589 ~ 35909243 (+) True st8sia6
XM_036940924.1 mRNA upstream 13013 35900832 ~ 35909241 (+) False st8sia6
XM_036940923.1 mRNA upstream 13015 35900833 ~ 35909239 (+) False st8sia6
XR_005035814.1 mRNA upstream 58250 35863923 ~ 35864004 (+) True LOC118938606
XM_021557668.2 mRNA downstream 119273 36041771 ~ 36047808 (+) False LOC110486225
XM_036940932.1 mRNA downstream 209070 36131568 ~ 36167388 (+) True LOC110486228
XM_021557676.2 mRNA downstream 415568 36338066 ~ 36339755 (+) False LOC110486232
XM_021557677.2 mRNA downstream 441057 36363555 ~ 36368288 (+) True LOC110486233
XM_036940935.1 mRNA downstream 534856 36457354 ~ 36460939 (+) False LOC118938276
TU1331612 other upstream 1234604 34681188 ~ 34687650 (+) True LOC110486188
TU1330567 other upstream 2118589 33790640 ~ 33803665 (+) True G1166779
TU1330025 other upstream 2673046 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 2691771 33229113 ~ 33230483 (+) True LOC110486146
TU1329495 other upstream 3199792 32715256 ~ 32722462 (+) True ifn2
TU1333280 other downstream 67358 35989856 ~ 35992600 (+) True G1169121
TU1333368 other downstream 245130 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 247398 36169896 ~ 36171571 (+) True G1169208
TU1333509 other downstream 415595 36338093 ~ 36339356 (+) True LOC110486232
TU1333650 other downstream 628523 36551021 ~ 36566778 (+) False LOC110486241

Expression Profile