RNA id: TU1333316


Basic Information

Item Value
RNA id TU1333316
length 359
lncRNA type intronic
GC content 0.39
exon number 1
gene id G1169155
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36032329 ~ 36032687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCATGCTTTGAACCTCCACTCTTTCCTAAACTCTAACCAAATGCATGGCCTACATTTATTTgttgctctttccctctctcagtggtgtaaagtacttaagtagttatttcaagtatttttacttaagtcgttttttgtggTTTCTGTAATTCACTACATCCCCGAAGAAAACTATATACTGTTTACCCCATACATTTACCCCGATACCCAAAAGtacttttgaatgcttagcagggcaGGAAAATTATcaaaattcacacacttatcatacgtactgcctctgatctggcggactcactaaacacatgcttcgtttgtaaatgatgtctgaatgttggagtgtgcccctggctatcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1333312 lncRNA upstream 3818 36028273 ~ 36028511 (+) True G1169151
TU1333310 lncRNA upstream 7136 36023698 ~ 36025193 (+) True G1169149
TU1333311 lncRNA upstream 9062 36022904 ~ 36023267 (+) True G1169150
TU1333306 lncRNA upstream 13135 36018985 ~ 36019194 (+) True G1169145
TU1333299 lncRNA upstream 19253 36012861 ~ 36013076 (+) True G1169139
TU1333317 lncRNA downstream 94 36032781 ~ 36033011 (+) True G1169156
TU1333323 lncRNA downstream 1643 36034330 ~ 36034580 (+) True G1169162
TU1333324 lncRNA downstream 7086 36039773 ~ 36040031 (+) True G1169163
TU1333320 lncRNA downstream 14959 36047646 ~ 36052964 (+) True LOC110486225
TU1333321 lncRNA downstream 20391 36053078 ~ 36053428 (+) True G1169160
XM_036940925.1 mRNA upstream 123086 35900832 ~ 35909243 (+) False st8sia6
XM_036940926.1 mRNA upstream 123086 35901589 ~ 35909243 (+) True st8sia6
XM_036940924.1 mRNA upstream 123088 35900832 ~ 35909241 (+) False st8sia6
XM_036940923.1 mRNA upstream 123090 35900833 ~ 35909239 (+) False st8sia6
XR_005035814.1 mRNA upstream 168325 35863923 ~ 35864004 (+) True LOC118938606
XM_021557668.2 mRNA downstream 9084 36041771 ~ 36047808 (+) False LOC110486225
XM_036940932.1 mRNA downstream 98881 36131568 ~ 36167388 (+) True LOC110486228
XM_021557676.2 mRNA downstream 305379 36338066 ~ 36339755 (+) False LOC110486232
XM_021557677.2 mRNA downstream 330868 36363555 ~ 36368288 (+) True LOC110486233
XM_036940935.1 mRNA downstream 424667 36457354 ~ 36460939 (+) False LOC118938276
TU1333280 other upstream 39729 35989856 ~ 35992600 (+) True G1169121
TU1331612 other upstream 1344679 34681188 ~ 34687650 (+) True LOC110486188
TU1330567 other upstream 2228664 33790640 ~ 33803665 (+) True G1166779
TU1330025 other upstream 2783121 33239953 ~ 33249208 (+) False G1166318
TU1329888 other upstream 2801846 33229113 ~ 33230483 (+) True LOC110486146
TU1333368 other downstream 134941 36167628 ~ 36168331 (+) True G1169207
TU1333369 other downstream 137209 36169896 ~ 36171571 (+) True G1169208
TU1333509 other downstream 305406 36338093 ~ 36339356 (+) True LOC110486232
TU1333650 other downstream 518334 36551021 ~ 36566778 (+) False LOC110486241
TU1333737 other downstream 637672 36670359 ~ 36671403 (+) True G1169532

Expression Profile