RNA id: TU1333369


Basic Information

Item Value
RNA id TU1333369
length 1676
RNA type TUCP
GC content 0.43
exon number 1
gene id G1169208
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36169896 ~ 36171571 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCGGGTTCACATACTTTCAAGCAGCTTTGTAACTAGTCTGTCCCACTggacacagacgtcagttcagcgtctattccacattggttcaacgtaattttgTTAATGTTGTGGACGTTGATGCAACCAGTGTGTGCCCGGTGAGGTGTGACCATCTTCTTGTTATTACTCAGCCCAAACAGATGAATGTTAGCTGGGGGTCCAGCCTAATCTAACTCCCCTATACAGCTCCATTAATTATTCACACTTAAAATGAAGTGCTTTGTAATGTCAAAACTAGTAGCAACTGAGCTGCCACCAACGAGAAGGAGACGAAAACTTAACTTTACTTGAGTTTTGaaaccccctttttctccccaattttgtgatatccaattacaatcttgtctcatcgttgcaactccccaacaggctcaggagaggtgaaggtcgagtcataCGTCCTCCGAAACCCTCGGGAGGCCCCGTTGTAACACCTTTTAATCAAGTGTTGTGCAACAGCTTGCTGGGGACAGGGAGCCTACCGGAAAAGGTTGAAAACACAATTTTTGTGTTCGTATTCTGTTTAGTGCAGAATTATATACCTTCTCTTTTGGTTTCATTTcctctcttttttttgttgttgtactttttctccccaattgttagttacagtcttgtcccatcgctgcaactcccctacagaTTCAggggaggcgaaggttgagagccatgcgtcctccgaaacctgaccctgccaagccacactgcttgcttaacccgcaccaatgtgtcggaggaagcaCCATCCAGCTGGCgactgaagtcagcttgcaggcgcatGGCCAACACAAGGAGTCACTACAGCGTGGTGAGAGAGGGAAATCCCAgccggccaacccctcccctaacccggacgacgctggaccaattgtgtgccgcctcatgggtctcctggtcatgGCCGGCTGTGACGCAGCCTGTGATCGAAACCgggcctgtagtgacgccttaagcactgtgatgcagtgccttagaccgctgcgccactcgggaggccccgtTTCCTCTCTTTAAAGCTTCTTAACACTATTATGGTGTGTCAAATCCTGTCTAGTGCAGAATTAGATCACTTTTTCTGGAGTATTTTCAACATTGATGTATGTATCTGGTCATTTGCCAGTTTAACCCATTTTGGTAGgcattgttgagcacagtgctcaATCCACTAGCAGTAACTAGAGGTTTTACAACAAGCGTTGCAGGATATGGTATTTGCCTCTACCATCAAAAGTTGGTTGAACGTAATTTTGCCTTATGGTTTTGATATCCGTTGATCATGAGGTGAGGTGATCCATTACACCTCATAGTGAAACAAAATGCTTAATATGAAAATATAAGTACACTATTATTTCTTCAAACACGCACACAACATTGTGTAAAAGATGTGGAATTACCCATAAACTCTGTAAAAACAGAGCCACGTGGCAAGATAGGaaggagatttttttttaaatacttccAATGAATTCAATCACTAAATATTCTCTTATCTTTGGCTATCCTCATAAAATTCTTACATTTTGAACAACATAATTGGTTTTATTCTCAAAATGTTTGGTAAAATAAAACGAACAAATCACTGAAATGACTTGCATTCATTTTTATTAAGTATatggttattattattttattatttt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1333355 lncRNA upstream 57464 36112232 ~ 36112432 (+) True G1169194
TU1333353 lncRNA upstream 59421 36110249 ~ 36110475 (+) True G1169192
TU1333346 lncRNA upstream 68666 36100951 ~ 36101230 (+) True G1169185
TU1333343 lncRNA upstream 75069 36094608 ~ 36094827 (+) True G1169182
TU1333321 lncRNA upstream 116468 36053078 ~ 36053428 (+) True G1169160
TU1333408 lncRNA downstream 37914 36209485 ~ 36210121 (+) True G1169247
TU1333451 lncRNA downstream 94899 36266470 ~ 36266905 (+) True G1169286
TU1333483 lncRNA downstream 134885 36306456 ~ 36306664 (+) True G1169315
TU1333545 lncRNA downstream 201995 36373566 ~ 36425661 (+) True G1169366
TU1333628 lncRNA downstream 331165 36502736 ~ 36503327 (+) True G1169444
XM_036940932.1 mRNA upstream 2508 36131568 ~ 36167388 (+) True LOC110486228
XM_021557668.2 mRNA upstream 122088 36041771 ~ 36047808 (+) False LOC110486225
XM_036940925.1 mRNA upstream 260653 35900832 ~ 35909243 (+) False st8sia6
XM_021557676.2 mRNA downstream 166495 36338066 ~ 36339755 (+) False LOC110486232
XM_021557677.2 mRNA downstream 191984 36363555 ~ 36368288 (+) True LOC110486233
XM_036940935.1 mRNA downstream 285783 36457354 ~ 36460939 (+) False LOC118938276
XM_036940936.1 mRNA downstream 285950 36457521 ~ 36460939 (+) True LOC118938276
XM_036940937.1 mRNA downstream 354068 36525639 ~ 36547943 (+) False LOC110486240
TU1333368 other upstream 1565 36167628 ~ 36168331 (+) True G1169207
TU1333280 other upstream 177296 35989856 ~ 35992600 (+) True G1169121
TU1331612 other upstream 1482246 34681188 ~ 34687650 (+) True LOC110486188
TU1330567 other upstream 2366231 33790640 ~ 33803665 (+) True G1166779
TU1330025 other upstream 2920688 33239953 ~ 33249208 (+) False G1166318
TU1333509 other downstream 166522 36338093 ~ 36339356 (+) True LOC110486232
TU1333650 other downstream 379450 36551021 ~ 36566778 (+) False LOC110486241
TU1333737 other downstream 498788 36670359 ~ 36671403 (+) True G1169532
TU1333748 other downstream 530701 36702272 ~ 36703736 (+) True G1169542
TU1333668 other downstream 599217 36770788 ~ 36806200 (+) False G1169468

Expression Profile