RNA id: TCONS_00042745



Basic Information


Item Value
RNA id TCONS_00042745
length 1795
RNA type nonsense_mediated_decay
GC content 0.43
exon number 15
gene id XLOC_021511
representative False

Chromosome Information


Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 12134839 ~ 12150667 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


GTTTCAGTGTTTTCAGACGGTTAGTTCCTAATATGTCTAAAAATAAGCAGACAACTGGACATAAAGCTGCCCACAGCTCACAAAGGAAAAAAGAAGTGGAGGCAAGGAGCTGTATACGGTACAGATGTGGCCTGACCAATACCATACAGGACGTCCTTAACCACAGACCAGGCTGGGTGGAAGTGAAAGATGATGCCGAATGGGACTTCAACTGGTGTGATGTTGGATGGCTGAGAGAGAACTTTGATCACTCATACATGGAAGAACATGTACGGATATGTCACTTCCGCAACCACTACGAGTTGACCCGTAAGAACCTGATGGTGAAGAACTTGAAGCGGTATAGAAAAACATTAGAGCGGGAGGTTGGGCGTTTGGAAGCAGccaaatgtgacttttttccgcGTACGTTTGAGTTGCCTAGTGAGTATCACATCTTTGTGGAGGAGTTTAAGAAAAGCCCGGGGAACACCTGGATCATGAAGCCtGTGGCTCGATCACAAGGGAAAGGAATTTTTCTGTTTCGAAAACTCAAGGATATCATAGATTGGAGGAAGGATGGGAGTCGCTCTGAAGAACAGAAAGATGAGGCTCAAGTTGAGAGCTACGTCGCTCAACGTTACATTGAGAATCCCTACCTTATAGCTGGGAGAAAATTTGATTTGAGAGTCTACGTTCTTGTAACatcaTATATTCCACTGAAAGCCTGGCTTTATCGTGATGGTTTTGCCCGATTTTCCAACACCAGGTTCTCTCTCAGCAGCATAGATGATCAATATGTTCATCTCACCAATGTTGCAGTGCAAAAGACAGCTCCTGATTATGATCCTGAGAAGGGCTGTAAGTGGCAGATGCAACAGCTACGGTGGTATCTGACTGCTAAGCATGGTTTCGAAACAGTGCAGACTCTCTTTAAAGAAATTGACAACGTATTTATTCGCAGCCTGCTTAGTGTGCAGAAGACCATCATCAATGACAAACACTGCTTTGAGCTGTACGGATATGACATTCTGCTGGACCAGGACTTAAAGCCGTGGCTAATTGAAGTGAACGCTTCGCCCTCCCTCACAGCCAGCAGTCAGGAAGACTATGACCTAAAATACAGACTTCTGGAGGACACCTTGCACATTGTTGACATGGAGGGCCGCCTGACGGGCAAGGAGAAGAGGATTGGCGGATTTGACCTAATGTGGAACGACGGTCCTGTCTACACGGATGTTGGTCTAGAGGCTCTCGGCAGCTCTTGCCTCGTGGCAAACACACACCTtgttgtaagagcaagttgatcttctagttgatcatttggaatcatctgtcgaactgcatcccaatcatcacaaatactgcagaagactagTATGGGGTCGTGCAAGAGATCTaaagagtggatagcaacatcaacagcttgagGCTGTGTGAATGATCGAGAGAAGCAGCTTCAACAGCTTCTAAAGCCTTTCCCAGGACAGAAGAAAACATGACAATATTCCTACGGCATCAAATCAGTGTGAAAAACTATGCTTGACATTCCCATTAATTCCAAAAATTGTTGTATTATGAGGAGTCAGAGGAGCGTACATATTTAAATACCCAAAAGATATCATTCACAAACTCAAaattgcattgtttttgatttatgatgataatttttgcatatttaattactagcacataaataaatactgtagacAAGGGCTCTGATGATGTAATGAAAACTGTTTATTATTTAGCTCTCATAAAAATAGCTGCGTTCAAAACTCTCAGCAAAATAAAGCACAATCTGACGATGATAgga

Function


GO:

id name namespace
GO:0018095 protein polyglutamylation biological_process
GO:0006464 cellular protein modification process biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0005929 cilium cellular_component
GO:0005524 ATP binding molecular_function
GO:0015631 tubulin binding molecular_function
GO:0070740 tubulin-glutamic acid ligase activity molecular_function

KEGG:

id description
ko04812 Cytoskeleton proteins

ZFIN:

id description
ZDB-GENE-030131-1582 Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Orthologous to human TTLL9 (tubulin tyrosine ligase like 9).

Ensembl:

ensembl_id ENSDART00000134776

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00042740 lncRNA upstream 282945 11848748 ~ 11851894 (+) True XLOC_021507
TCONS_00042736 lncRNA upstream 760155 11347436 ~ 11374684 (+) False XLOC_021506
TCONS_00044786 lncRNA upstream 910234 11224124 ~ 11224605 (+) True XLOC_021505
TCONS_00042733 lncRNA upstream 1320342 10814030 ~ 10814497 (+) True XLOC_021504
TCONS_00042721 lncRNA upstream 1978311 10146614 ~ 10156528 (+) True XLOC_021498
TCONS_00044787 lncRNA downstream 56764 12207431 ~ 12207959 (+) False XLOC_021513
TCONS_00044788 lncRNA downstream 108869 12259536 ~ 12279048 (+) True XLOC_021514
TCONS_00044789 lncRNA downstream 522736 12673403 ~ 12830266 (+) False XLOC_021518
TCONS_00044790 lncRNA downstream 523383 12674050 ~ 12830266 (+) True XLOC_021518
TCONS_00044791 lncRNA downstream 524260 12674927 ~ 12675421 (+) True XLOC_021519
TCONS_00042742 mRNA upstream 28000 12072980 ~ 12106839 (+) True XLOC_021509
TCONS_00042738 mRNA upstream 273446 11669109 ~ 11861393 (+) False XLOC_021507
TCONS_00042739 mRNA upstream 275490 11669337 ~ 11859349 (+) False XLOC_021507
TCONS_00042734 mRNA upstream 682527 11285662 ~ 11452312 (+) False XLOC_021506
TCONS_00042735 mRNA upstream 686092 11347313 ~ 11448747 (+) False XLOC_021506
TCONS_00042747 mRNA downstream 10233 12160900 ~ 12162754 (+) True XLOC_021512
TCONS_00042748 mRNA downstream 47575 12198242 ~ 12228363 (+) False XLOC_021513
TCONS_00042750 mRNA downstream 211232 12361899 ~ 12412034 (+) False XLOC_021515
TCONS_00042751 mRNA downstream 256055 12406722 ~ 12414082 (+) True XLOC_021515
TCONS_00042753 mRNA downstream 303875 12454542 ~ 12490001 (+) False XLOC_021516
TCONS_00042743 other upstream 51168 12083557 ~ 12083671 (+) True XLOC_021510
TCONS_00042741 other upstream 199139 11935584 ~ 11935700 (+) True XLOC_021508
TCONS_00042731 other upstream 1528293 10601324 ~ 10606546 (+) True XLOC_021503
TCONS_00042724 other upstream 1783266 10350891 ~ 10351573 (+) True XLOC_021499
TCONS_00042723 other upstream 1784410 10347877 ~ 10350429 (+) False XLOC_021499
TCONS_00042749 other downstream 63300 12213967 ~ 12218375 (+) True XLOC_021513
TCONS_00042766 other downstream 1291941 13442608 ~ 13442722 (+) True XLOC_021525
TCONS_00042770 other downstream 1453551 13604218 ~ 13604320 (+) True XLOC_021527
TCONS_00042779 other downstream 2317336 14468003 ~ 14470571 (+) True XLOC_021539
TCONS_00042786 other downstream 3202466 15353133 ~ 15353249 (+) True XLOC_021542

Expression Profile


Expression of TCONS_00042745 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.
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Expression of TCONS_00042745 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 3.
End of interactive chart.

Homologous


species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000021_02503590_02509554.mRNA True 2133 mRNA 0.41 11 CI01000021 2502568 ~ 2509554 (-)
bowfin (Amia calva) AMCG00008188 True 1344 mRNA 0.55 14 CM030123.1 45228642 ~ 45232701 (+)