Item | Value |
---|---|
RNA id | TCONS_00042745 |
length | 1795 |
RNA type | nonsense_mediated_decay |
GC content | 0.43 |
exon number | 15 |
gene id | XLOC_021511 |
representative | False |
Item | Value |
---|---|
chromosome id | NC_007134.7 |
NCBI id | CM002907.2 |
chromosome length | 46223584 |
location | 12134839 ~ 12150667 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0018095 | protein polyglutamylation | biological_process |
GO:0006464 | cellular protein modification process | biological_process |
GO:0000226 | microtubule cytoskeleton organization | biological_process |
GO:0005929 | cilium | cellular_component |
GO:0005524 | ATP binding | molecular_function |
GO:0015631 | tubulin binding | molecular_function |
GO:0070740 | tubulin-glutamic acid ligase activity | molecular_function |
id | description |
---|---|
ko04812 | Cytoskeleton proteins |
id | description |
---|---|
ZDB-GENE-030131-1582 | Predicted to enable tubulin binding activity and tubulin-glutamic acid ligase activity. Predicted to be involved in microtubule cytoskeleton organization and protein polyglutamylation. Predicted to act upstream of or within cellular protein modification process. Predicted to be active in cilium. Orthologous to human TTLL9 (tubulin tyrosine ligase like 9). |
ensembl_id | ENSDART00000134776 |
12,124,000
12,126,000
12,128,000
12,130,000
12,132,000
12,134,000
12,136,000
12,138,000
12,140,000
12,142,000
12,144,000
12,146,000
12,148,000
12,150,000
12,152,000
12,154,000
12,156,000
12,158,000
12,160,000
NC_007134.7
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00042740 | lncRNA | upstream | 282945 | 11848748 ~ 11851894 (+) | True | XLOC_021507 |
TCONS_00042736 | lncRNA | upstream | 760155 | 11347436 ~ 11374684 (+) | False | XLOC_021506 |
TCONS_00044786 | lncRNA | upstream | 910234 | 11224124 ~ 11224605 (+) | True | XLOC_021505 |
TCONS_00042733 | lncRNA | upstream | 1320342 | 10814030 ~ 10814497 (+) | True | XLOC_021504 |
TCONS_00042721 | lncRNA | upstream | 1978311 | 10146614 ~ 10156528 (+) | True | XLOC_021498 |
TCONS_00044787 | lncRNA | downstream | 56764 | 12207431 ~ 12207959 (+) | False | XLOC_021513 |
TCONS_00044788 | lncRNA | downstream | 108869 | 12259536 ~ 12279048 (+) | True | XLOC_021514 |
TCONS_00044789 | lncRNA | downstream | 522736 | 12673403 ~ 12830266 (+) | False | XLOC_021518 |
TCONS_00044790 | lncRNA | downstream | 523383 | 12674050 ~ 12830266 (+) | True | XLOC_021518 |
TCONS_00044791 | lncRNA | downstream | 524260 | 12674927 ~ 12675421 (+) | True | XLOC_021519 |
TCONS_00042742 | mRNA | upstream | 28000 | 12072980 ~ 12106839 (+) | True | XLOC_021509 |
TCONS_00042738 | mRNA | upstream | 273446 | 11669109 ~ 11861393 (+) | False | XLOC_021507 |
TCONS_00042739 | mRNA | upstream | 275490 | 11669337 ~ 11859349 (+) | False | XLOC_021507 |
TCONS_00042734 | mRNA | upstream | 682527 | 11285662 ~ 11452312 (+) | False | XLOC_021506 |
TCONS_00042735 | mRNA | upstream | 686092 | 11347313 ~ 11448747 (+) | False | XLOC_021506 |
TCONS_00042747 | mRNA | downstream | 10233 | 12160900 ~ 12162754 (+) | True | XLOC_021512 |
TCONS_00042748 | mRNA | downstream | 47575 | 12198242 ~ 12228363 (+) | False | XLOC_021513 |
TCONS_00042750 | mRNA | downstream | 211232 | 12361899 ~ 12412034 (+) | False | XLOC_021515 |
TCONS_00042751 | mRNA | downstream | 256055 | 12406722 ~ 12414082 (+) | True | XLOC_021515 |
TCONS_00042753 | mRNA | downstream | 303875 | 12454542 ~ 12490001 (+) | False | XLOC_021516 |
TCONS_00042743 | other | upstream | 51168 | 12083557 ~ 12083671 (+) | True | XLOC_021510 |
TCONS_00042741 | other | upstream | 199139 | 11935584 ~ 11935700 (+) | True | XLOC_021508 |
TCONS_00042731 | other | upstream | 1528293 | 10601324 ~ 10606546 (+) | True | XLOC_021503 |
TCONS_00042724 | other | upstream | 1783266 | 10350891 ~ 10351573 (+) | True | XLOC_021499 |
TCONS_00042723 | other | upstream | 1784410 | 10347877 ~ 10350429 (+) | False | XLOC_021499 |
TCONS_00042749 | other | downstream | 63300 | 12213967 ~ 12218375 (+) | True | XLOC_021513 |
TCONS_00042766 | other | downstream | 1291941 | 13442608 ~ 13442722 (+) | True | XLOC_021525 |
TCONS_00042770 | other | downstream | 1453551 | 13604218 ~ 13604320 (+) | True | XLOC_021527 |
TCONS_00042779 | other | downstream | 2317336 | 14468003 ~ 14470571 (+) | True | XLOC_021539 |
TCONS_00042786 | other | downstream | 3202466 | 15353133 ~ 15353249 (+) | True | XLOC_021542 |
species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
---|---|---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01000021_02503590_02509554.mRNA | True | 2133 | mRNA | 0.41 | 11 | CI01000021 | 2502568 ~ 2509554 (-) |
bowfin (Amia calva) | AMCG00008188 | True | 1344 | mRNA | 0.55 | 14 | CM030123.1 | 45228642 ~ 45232701 (+) |