RNA id: TU1333702


Basic Information

Item Value
RNA id TU1333702
length 456
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G1169498
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36594010 ~ 36594465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtatacagagaagagagtcggtccaagaattgaaccctgtggcacccccatagagactgccagaggtccggacaacagaccctcagatttgacacactgaactctatcagagaagtagttggtgaaccaggcgaggcaatcatttgagaaaccaaggctgtcgagtctgccgatgaggatgtggtgattgacagagtcgaaagccttggccagatcaatgaatacggctgcacagtaatgtttcttatcgatggcggttaagatatcgtttaggaccttgagcgtggctgaggtgcacccatgaccagctctgaaaccagattgcatagcagagaaggtatagtgagattcaaaatggtcggtaatctgtttgttgacttggctttcgaagaccttagaaaggcatggtaggatagatataggtctgtagcagtttgggtcaagagtgtccccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1333700 lncRNA upstream 5279 36588508 ~ 36588731 (+) True G1169496
TU1333649 lncRNA upstream 11929 36580175 ~ 36582081 (+) True LOC110486241
TU1333693 lncRNA upstream 24128 36569665 ~ 36569882 (+) True G1169489
TU1333542 lncRNA upstream 46331 36545142 ~ 36547679 (+) True LOC110486240
TU1333553 lncRNA upstream 86701 36505630 ~ 36507309 (+) True G1169371
TU1333703 lncRNA downstream 256 36594721 ~ 36595178 (+) True G1169499
TU1333708 lncRNA downstream 14713 36609178 ~ 36609443 (+) True G1169504
TU1333710 lncRNA downstream 22006 36616471 ~ 36616756 (+) True G1169506
TU1333744 lncRNA downstream 98724 36693189 ~ 36694410 (+) True G1169538
TU1333656 lncRNA downstream 148826 36743291 ~ 36806200 (+) False G1169468
XM_036940938.1 mRNA upstream 11918 36561330 ~ 36582092 (+) False LOC110486241
XM_036940937.1 mRNA upstream 46067 36525639 ~ 36547943 (+) False LOC110486240
XM_036940935.1 mRNA upstream 133071 36457354 ~ 36460939 (+) False LOC118938276
XM_036940936.1 mRNA upstream 133071 36457521 ~ 36460939 (+) True LOC118938276
XM_021557677.2 mRNA upstream 225722 36363555 ~ 36368288 (+) True LOC110486233
XR_005035531.1 mRNA downstream 37981 36632446 ~ 36661543 (+) False LOC110486244
XR_005035529.1 mRNA downstream 37981 36632446 ~ 36664344 (+) False LOC110486244
XR_005035530.1 mRNA downstream 37981 36632446 ~ 36664344 (+) False LOC110486244
XM_036940939.1 mRNA downstream 37982 36632447 ~ 36664344 (+) True LOC110486244
XM_036940940.1 mRNA downstream 77843 36672308 ~ 36677819 (+) True LOC110486247
TU1333650 other upstream 27232 36551021 ~ 36566778 (+) False LOC110486241
TU1333509 other upstream 254654 36338093 ~ 36339356 (+) True LOC110486232
TU1333369 other upstream 422439 36169896 ~ 36171571 (+) True G1169208
TU1333368 other upstream 425679 36167628 ~ 36168331 (+) True G1169207
TU1333280 other upstream 601410 35989856 ~ 35992600 (+) True G1169121
TU1333737 other downstream 75894 36670359 ~ 36671403 (+) True G1169532
TU1333748 other downstream 107807 36702272 ~ 36703736 (+) True G1169542
TU1333668 other downstream 176323 36770788 ~ 36806200 (+) False G1169468
TU1333673 other downstream 190347 36784812 ~ 36812201 (+) False G1169472
TU1333676 other downstream 190347 36784812 ~ 36806836 (+) True G1169472

Expression Profile