RNA id: TU1335477


Basic Information

Item Value
RNA id TU1335477
length 3545
RNA type TUCP
GC content 0.41
exon number 6
gene id G1171057
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36665169 ~ 36828425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTAAAGGAGCTGGAGAAAGTATGCCAGCCTATCATTACCAAGCTGTACCAGCAGGGAGGGATGCCCACAGGTTGCTGTGGAGATCAGGCACGGACCAGCTCTGGTGACAGCTCCCAAGGCCCAACCATTGAAGAGATTGACTAAAGTGAGGGATTTTTATAAAGGACTTTTCAAAATGCATTAGTATCACTGCATACAATTTACTATTCAGGAAATACTTTGTACTTGTAAAAACACACTGTACATCTGTTGATTCATACCATATTGCAAAAAGAAAGTGGTGGACAGGTGCGACCAGACCATTTCCTGGTTGGAGAACAACCAGCTGGGCGACAAAGAGGAGTATGAGCATCAGCTAAAGGAGCTGGAGAAAGTATGCCAGCCTATCATTACCAAGCTGTACCAGCAGGGAGGGATGCCCACAGGTTGCTGTGGAGATCAGGCACGGACCAGCTCTGGTGACAGCTCCCAAGGCCCAACCATTGAAGAGATTGACTAAAGTGAGGGATTTTTATAAAGGACTTTTCAAAATGCATTAGTATCACTGCATACAATTTACTATTCAGGAAATACTTTGTACTTGTAAAAACACACTGTACATCTGTTGATTCATACCATATTGCATTGCTGGACattgcaaataaaatgtatttaaatatgtTTCTAGGTCTGTTGGCTGTTTTCTTGAATTCCTTCTCATCATAACACATTGATTATTCACATTTTTTACACAATACCATGAAATATTGTAAACAAAACTTTGATAGACGGCTAAACCACCAGAGAGAACAAGTGAAGACACCTTAATGGCCACAATGTTTAGCTTATCAACTCTTTATTCTGCGATAACATCTGATACAATCACTATGGTCCTTCTTGGAAAAAGCAGCACAAATACACTTCTGGcacatataaaaaaaacaattacagGTCACATTTTTCCTTACTTTGTGCTTATTGGTGTCAAGCTCAAAGAACCAAATACTGTATATTTGACTGATTTTGAAgtatttaaagtggaactgacagcatttgaactactttgtttcatatctgcaaacggacaatcataatatcagtaaaaCATATCAAATTCACAGTTTATGCTTCAAAACCAACTTTGTAAGAGGttttttaaaaataggttctatttgactcAAAATTCCATGTTGTACAGTACGgtattgttggcagaatagatggatgcagctcaatgcatgattaatataattcaccaatacatttcttggtagtccaaaacatatttctatcaggttgtaaattatGGCTGGCCtagtacattgtttgctgccgcCACCCATTCAGGATGcagtgtttcagtttcaatgacttcATATTTTGAACAAAAACGGACGACTGTAaataaggctgggaatgtcaatacaatgaaACTATAAGGTGCTCACTCatacaattattatttaattcaatgaaaaacatgttttaagttcAAATGTTACAACAACCTATCGCTAAGTTGTTGTTATTTGGTGATAAATACTTTTTGATTAGGGTCGCAGCATATTATGGACTTCTGCAAGCGTAGCAGCAAAGGCTGGACAAATGATTTATCTATTTTGTTTTAAAACGTTAAGATGCTATATACAGCATATGAACATAAGTGGACATTATAAAGGGCCATATTCTTTAGAATAAAACAATGGCCAGTTTGAGTTGCAGTTGCACGTTGTTTTGTAAAAGAAATAGCCTATGTCTGGCGAATTctttgggtacattgacttcaataattCAAAACCTAGGAGCCTCGTGGTTCTCACCACATTCCATAGAATTACACAATAATTATGACTACagctggaggacatcctccaacctatcagatcTCTTGCAGTATGAACTAACAAGTTTTCCATCCAAAGGATCTGATCATTAatttagtactgaaagcataagctacagctagctagcactgcagtgagtagttgactcaaagagagaaaggCAATAGTTGaagcagcatagagagagagagatagctataTTTCATTAGATGTTTTCTTCTTCTTAGTCTACCTTTCACTTAGCTATTGCAGCTAATTTATTCTACCCAAAGaacctgactcaaacagagataactgctatttatgttagctagctggctaaggctatccaacactgaaactcttccaagtcaatgtaagcttttggttttataaatgtatGGGCACCGGGGCCCGCCGGTTTAACTGCTAAACTACTTGCTGTAAACTGTAATGCGTGATTGTACACTTGGGATTGGATTGTGGGTTTACTAATGTGTTTgttctattttggtttgtttTAATATAACCTTGATATGGTGACGATGTAGGTTGTGTAGCGGTTAGTGGTTATGGTGTGACGGTTTGGCAAGGATAGGTTTTTGTGCCTAGTCACAGAtagctgttgtgttgtGCGTGATTGTACACTTGGGATTGGATTGTGGGTTTACTAATGTGTTTgttctattttggtttgtttTAATATAACCTTGATATGGTGACGATGTAGGTTGTGTAGCGGTTAGTGGTTATGGTGTGACGGTTTGGCAAGGATAGGTTTTTGTGCCTAGTCACAGAtagctgttgtgttgtgtactgaagtccacaagtgaagggaaaaggtgagaggaggaaagCCTGTAGATGCGAGAATGAATTTTACAACAAGTAAAGTGATAATGCtctatgtggctgctatgaaatttaactgtgtgtgggtgatcaggggtgtattcattctgccgattgtTTCTTAAACAGAACGAAATGGggcgggacctacctgaatttatttgtccaatagaaactttcGAAACGTTTTGCAACTATTTGGACTAAAGATTACAccccagatcagctagatgcaggcaagagtgtgcaagatgGGATTGAATGTGTCTCTGCCTGTCACCTTGATCActccaatttgtctctcgacctgtgcacCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGTAAAGTGGAGATCATCGCCAACGACCAGGGCAACAGGACCACACCCAGCTATGTGGCCTTCACAGACACTGAGAGACTTATCGGAGACGCAGCAAAGAACCAGGTGGCCATGAACCCCAACAACACCGTTTTCGACGCCAAACGCCTGATTGGCCGAAAGTTCAACGATCAGGTCGTGCAAGCCGACATGAAGCACTGGCCCTTCAAGGTGGTCAGCGACGGAGGAAAGCCTAAAGTTCAGGTCGATTACAAAGGTGAGAACAAATGCTTCAACCCAGAGGAGATCTCTTCCATGGTCCTGGTGAAGATGAGGGAGATCGCTGAGGCTTACCTGGGCCAGAAGGTGTCCAATGCAGTCATCACAGTCCCTGCCTACTTCAACGATTCACAGAGACAGGCCACTAAGGACGCTGGAGTGATCGCTGGGCTGAATGTGCTGAGGATCATCAACGAGCCCACGGCGGCAGCCATCGCCTACGGCATGGACAAAGGCATGTCCAGGGAACGCAACGTCCTGATTTTTGACCTGGGTGGGGGCACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1335600 lncRNA downstream 10197 36733256 ~ 36734575 (-) True G1171116
TU1335581 lncRNA downstream 87675 36652759 ~ 36657097 (-) True G1171101
TU1335457 lncRNA downstream 133725 36610764 ~ 36611047 (-) True G1171056
TU1335450 lncRNA downstream 152323 36592167 ~ 36592449 (-) True G1171049
TU1335443 lncRNA downstream 166537 36577070 ~ 36578235 (-) True G1171042
TU1335620 lncRNA upstream 12245 36830920 ~ 36831206 (-) True G1171132
TU1335621 lncRNA upstream 12581 36831256 ~ 36831589 (-) True G1171133
TU1335545 lncRNA upstream 37202 36855877 ~ 36856985 (-) True G1171068
TU1335537 lncRNA upstream 38764 36857439 ~ 36861278 (-) False LOC110485161
TU1335627 lncRNA upstream 49296 36867971 ~ 36868185 (-) True G1171139
XM_036940956.1 mRNA downstream 7267 36734571 ~ 36737505 (-) True LOC110486258
LOC118938070 mRNA downstream 9054 36733118 ~ 36735718 (-) True LOC118938070
XM_021557698.2 mRNA downstream 12565 36726699 ~ 36732207 (-) False LOC110486251
XM_036940951.1 mRNA upstream 6556 36825231 ~ 36828499 (-) True LOC110485160
XM_021557702.2 mRNA upstream 22106 36840781 ~ 36851302 (-) False LOC110486253
XM_021557701.2 mRNA upstream 22106 36840781 ~ 36852060 (-) True LOC110486253
XM_036940960.1 mRNA upstream 38755 36857430 ~ 36929601 (-) False LOC110485161
XM_036940958.1 mRNA upstream 38755 36857430 ~ 37073344 (-) False LOC110485161
TU1335452 other downstream 148131 36595832 ~ 36596641 (-) True G1171051
TU1335451 other downstream 150246 36594054 ~ 36594526 (-) True G1171050
TU1335391 other downstream 251248 36493089 ~ 36493524 (-) True G1170998
TU1335200 other downstream 634333 36110102 ~ 36110439 (-) True G1170826
TU1335185 other downstream 653355 36090762 ~ 36091417 (-) True G1170811
TU1335481 other upstream 919 36819594 ~ 36828425 (-) False G1171057
TU1335522 other upstream 919 36819594 ~ 36828425 (-) False G1171057
TU1335460 other upstream 7781 36826456 ~ 36828425 (-) True G1171057
TU1335637 other upstream 65343 36884018 ~ 36884340 (-) True G1171149
TU1335834 other upstream 379553 37198228 ~ 37198640 (-) True G1171337

Expression Profile