RNA id: TU1335494


Basic Information

Item Value
RNA id TU1335494
length 324
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G1171057
representative False

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36665169 ~ 36828425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCTAAAGGAGCTGGAGAAAGTATGCCAGCCTATCATTACCAAGCTGTACCAGCAGGGAGGGATGCCCACAGGTTGCTGTGGAGATCAGGCACGGACCAGCTCTGGTGACAGCTCCCAAGGCCCAACCATTGAAGAGATTGACTAAAGTGAGGGATTTTTATAAAGGACTTTTCAAAATGCATTAGTATCACTGCATACAATTTACTATTCAGGAAATACTTTGTACTTGTAAAAACACACTGTACATCTGTTGATTCATACCATATTGCATTGCTGGACattgcaaataaaatgtatttaaatatgtaaaaaaaaaaaaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1335469 lncRNA downstream 9250 36665169 ~ 36806197 (-) False G1171057
TU1335620 lncRNA upstream 12245 36830920 ~ 36831206 (-) True G1171132
TU1335621 lncRNA upstream 12581 36831256 ~ 36831589 (-) True G1171133
TU1335545 lncRNA upstream 37202 36855877 ~ 36856985 (-) True G1171068
TU1335537 lncRNA upstream 38764 36857439 ~ 36861278 (-) False LOC110485161
TU1335627 lncRNA upstream 49296 36867971 ~ 36868185 (-) True G1171139
LOC118938278 mRNA downstream 842 36811495 ~ 36814605 (-) True LOC118938278
LOC118938284 mRNA downstream 6284 36805853 ~ 36809163 (-) True LOC118938284
XM_036940950.1 mRNA downstream 13443 36798804 ~ 36802004 (-) True LOC118938283
LOC110486257 mRNA downstream 20209 36791910 ~ 36795238 (-) True LOC110486257
XM_036940946.1 mRNA downstream 27397 36777935 ~ 36788050 (-) True LOC118938279
XM_036940951.1 mRNA upstream 6556 36825231 ~ 36828499 (-) True LOC110485160
XM_021557702.2 mRNA upstream 22106 36840781 ~ 36851302 (-) False LOC110486253
XM_021557701.2 mRNA upstream 22106 36840781 ~ 36852060 (-) True LOC110486253
XM_036940960.1 mRNA upstream 38755 36857430 ~ 36929601 (-) False LOC110485161
XM_036940958.1 mRNA upstream 38755 36857430 ~ 37073344 (-) False LOC110485161
TU1335514 other downstream 6425 36800029 ~ 36809022 (-) False G1171057
TU1335480 other downstream 8498 36799176 ~ 36806949 (-) False G1171057
TU1335459 other downstream 9250 36744772 ~ 36806197 (-) False G1171057
TU1335503 other downstream 69011 36744772 ~ 36746436 (-) False G1171057
TU1335452 other downstream 218806 36595832 ~ 36596641 (-) True G1171051
TU1335481 other upstream 919 36819594 ~ 36828425 (-) False G1171057
TU1335522 other upstream 919 36819594 ~ 36828425 (-) False G1171057
TU1335460 other upstream 7781 36826456 ~ 36828425 (-) True G1171057
TU1335637 other upstream 65343 36884018 ~ 36884340 (-) True G1171149
TU1335834 other upstream 379553 37198228 ~ 37198640 (-) True G1171337

Expression Profile