RNA id: TU1335610


Basic Information

Item Value
RNA id TU1335610
length 916
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G1171122
representative True

Chromosome Information

Item Value
chromosome id NC_048577.1
NCBI id CM023231.2
chromosome length 73332040
location 36754229 ~ 36762017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacctgaatttatttgtccaatagaaactttcGAAACGTTTTGCAACTATTTGGACTAAAGATTACAccccagatcagctagatgcaggcaagagtgtgcaagatgGGATTGAATGTGTCTCTGCCTGTCACCTTGATCActccaatttgtctctcgacctgtgcacctacggtATAAACTTTCATTTCTAGGCTATAGGTTGTAGCAATCTCTTGATTGGTATAGGGAAATTTGAgtgtcatgtagtagcctaaacctattgatgtgacattgagctgggtgaatgggaatatgaatgacagtcatccaatatgctataaTCGAAATAAGGCCATGGTAATAAAACGAAATCCTCCATAATCTTGAACGGCACtgctgtgtatatagtgtgaaggGTGTCCTCATCTAGTAGTTGCATTCTGATATGGTAAGGCAACTTAAAGTGCGTGAAATCATAGTATTTtactgtcagccattgttgccattaatgctCAATCAgaccaggagaggagggagattaatgagccaattgtcaACTgcggattattaggtgaccgtgatggtttgaagGTCAAATTGGGAATTTaaccaggacaccggggttaacacccctactcttacaataagtgccatgggatctttaatgacctcagagagtcaggacacccgtttaacgtcccatctgaaagatggcaccctacacatggcaatgtccccaatcactgccctggggcattaagattttaaaaaattagaccagaggaaagagtgcctcctactggccctccaacaccacttccagcagcatctggtctcccatctagggactgaccaggaccaaccctgcttagcttcagaagcaagccagcagtggtatgcagggtggtaagcTGCTGgcgaaataaggtatttctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1335600 lncRNA downstream 19654 36733256 ~ 36734575 (-) True G1171116
TU1335581 lncRNA downstream 97132 36652759 ~ 36657097 (-) True G1171101
TU1335457 lncRNA downstream 143182 36610764 ~ 36611047 (-) True G1171056
TU1335450 lncRNA downstream 161780 36592167 ~ 36592449 (-) True G1171049
TU1335443 lncRNA downstream 175994 36577070 ~ 36578235 (-) True G1171042
TU1335495 lncRNA upstream 48488 36810505 ~ 36818675 (-) False G1171057
TU1335494 lncRNA upstream 53430 36815447 ~ 36818675 (-) False G1171057
TU1335508 lncRNA upstream 53430 36815447 ~ 36818675 (-) False G1171057
TU1335620 lncRNA upstream 68903 36830920 ~ 36831206 (-) True G1171132
TU1335621 lncRNA upstream 69239 36831256 ~ 36831589 (-) True G1171133
XM_036940947.1 mRNA downstream 892 36750225 ~ 36753337 (-) False LOC118938280
XM_036940944.1 mRNA downstream 7771 36743294 ~ 36746458 (-) True LOC110512845
XM_036940956.1 mRNA downstream 16724 36734571 ~ 36737505 (-) True LOC110486258
LOC118938070 mRNA downstream 18511 36733118 ~ 36735718 (-) True LOC118938070
XM_021557700.2 mRNA downstream 22022 36726699 ~ 36732207 (-) True LOC110486251
XR_005035532.1 mRNA upstream 1964 36763981 ~ 36767309 (-) True LOC118938277
XM_036940949.1 mRNA upstream 8858 36770875 ~ 36774178 (-) True LOC118938282
XM_036940945.1 mRNA upstream 15917 36777934 ~ 36781055 (-) False LOC118938279
XM_036940946.1 mRNA upstream 15918 36777935 ~ 36788050 (-) True LOC118938279
NM_001124745.1 mRNA upstream 22797 36784814 ~ 36788029 (-) True hsp70b
TU1335503 other downstream 7793 36744772 ~ 36746436 (-) False G1171057
TU1335452 other downstream 157588 36595832 ~ 36596641 (-) True G1171051
TU1335451 other downstream 159703 36594054 ~ 36594526 (-) True G1171050
TU1335391 other downstream 260705 36493089 ~ 36493524 (-) True G1170998
TU1335200 other downstream 643790 36110102 ~ 36110439 (-) True G1170826
TU1335480 other upstream 37159 36799176 ~ 36806949 (-) False G1171057
TU1335514 other upstream 38012 36800029 ~ 36809022 (-) False G1171057
TU1335510 other upstream 44280 36806297 ~ 36819541 (-) False G1171057
TU1335481 other upstream 57577 36819594 ~ 36828425 (-) False G1171057
TU1335522 other upstream 57577 36819594 ~ 36828425 (-) False G1171057